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Sequence Set Browser

 

NZ_AAYU00000000.1 Yersinia pestis biovar Antiqua str. B42003004

Master
# of Scaffolds/Chrs: 69
BioProject: PRJNA224116
BioSample: SAMN02404401
Assembly: GCF_000169675.1
Keywords: WGS
Annotation: Scaffolds
Organism: Yersinia pestis biovar Antiqua str. B42003004show lineagehide lineage
Biosource:
/biovar = Antiqua
/mol_type = genomic genomic
/strain = B42003004
WGS: AAYU01000001:AAYU01000069
Scaffolds: NZ_AAYU01000001:NZ_AAYU01000069
69 scaffolds, 4,297 proteins, total length is 4,841,690 bases
Reference:
Yersinia pestis Strain B42003004 project at JCVI/TIGR : Unpublished – Ravel,J., Eppinger,M., Rosovitz,M., Lindler,L.E., Yang,R.
Reference:
Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China : J. Bacteriol. 191 (24), 7628-7629 (2009) – show 7 authorshide authors
Eppinger,M., Guo,Z., Sebastian,Y., Song,Y., Lindler,L.E., Yang,R., Ravel,J.
Submission:
Submitted (22-MAR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – Ravel,J.
Submission:
Submitted (01-MAR-2010) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – Payne,S.H., Sutton,G.G.

The Yersinia pestis biovar Antiqua str. B42003004 whole genome shotgun (WGS) project has the project accession NZ_AAYU00000000. This version of the project (01) has the accession number NZ_AAYU01000000, and consists of sequences AAYU01000001-AAYU01000069.

Annotation was updated on the contigs in March 2010.

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 05/15/2017 19:55:51
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 4.2
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 4,625
CDS (total) : 4,524
Genes (coding) : 4,343
CDS (coding) : 4,343
Genes (RNA) : 101
rRNAs : 9, 10, 10 ( 5S, 16S, 23S )
complete rRNAs : 8, 5, 5 ( 5S, 16S, 23S )
partial rRNAs : 1, 5, 5 ( 5S, 16S, 23S )
tRNAs : 60
ncRNAs : 12
Pseudo Genes (total) : 181
Pseudo Genes (ambiguous residues) : 0 of 181
Pseudo Genes (frameshifted) : 93 of 181
Pseudo Genes (incomplete) : 97 of 181
Pseudo Genes (internal stop) : 22 of 181
Pseudo Genes (multiple problems) : 28 of 181
CRISPR Arrays : 3
##Genome-Annotation-Data-END##