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Sequence Set Browser

 

NZ_AAWE00000000.1 Vibrio cholerae B33

Master
# of Scaffolds/Chrs: 200
BioProject: PRJNA224116
BioSample: SAMN02471145
Assembly: GCF_000153965.1
Keywords: WGS
Annotation: Scaffolds
Organism: Vibrio cholerae B33show lineagehide lineage
Biosource:
/mol_type = genomic genomic
/strain = B33
WGS: AAWE01000001:AAWE01000390
Scaffolds: NZ_AAWE01000110:NZ_AAWE01000110, NZ_AAWE01000124:NZ_AAWE01000124, NZ_AAWE01000150:NZ_AAWE01000150, NZ_AAWE01000220:NZ_AAWE01000220, NZ_AAWE01000238:NZ_AAWE01000238, NZ_AAWE01000240:NZ_AAWE01000241, NZ_AAWE01000257:NZ_AAWE01000257, NZ_AAWE01000261:NZ_AAWE01000261, NZ_AAWE01000267:NZ_AAWE01000267, NZ_AAWE01000270:NZ_AAWE01000270, NZ_AAWE01000280:NZ_AAWE01000281, NZ_AAWE01000285:NZ_AAWE01000285, NZ_AAWE01000287:NZ_AAWE01000287, NZ_AAWE01000295:NZ_AAWE01000295, NZ_AAWE01000298:NZ_AAWE01000298, NZ_AAWE01000304:NZ_AAWE01000304, NZ_AAWE01000306:NZ_AAWE01000308, NZ_AAWE01000310:NZ_AAWE01000310, NZ_AAWE01000313:NZ_AAWE01000369
200 scaffolds, 3,483 proteins, total length is 4,043,735 bases
Reference:
Annotation of Vibrio cholerae B33 : Unpublished – Heidelberg,J., Sebastian,Y.
Submission:
Submitted (26-DEC-2006) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – Heidelberg,J.

The Vibrio cholerae B33 whole genome shotgun (WGS) project has the project accession NZ_AAWE00000000. This version of the project (01) has the accession number NZ_AAWE01000000, and consists of sequences NZ_DS178044-NZ_DS178164.

Annotation was added to the contigs in March 2007.

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 03/22/2017 11:40:50
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 4.1
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 3,987
CDS (total) : 3,906
Genes (coding) : 3,587
CDS (coding) : 3,587
Genes (RNA) : 81
rRNAs : 5, 8, 7 ( 5S, 16S, 23S )
complete rRNAs : 5, 1, 2 ( 5S, 16S, 23S )
partial rRNAs : 7, 5 ( 16S, 23S )
tRNAs : 57
ncRNAs : 4
Pseudo Genes (total) : 319
Pseudo Genes (ambiguous residues) : 27 of 319
Pseudo Genes (frameshifted) : 105 of 319
Pseudo Genes (incomplete) : 210 of 319
Pseudo Genes (internal stop) : 24 of 319
Pseudo Genes (multiple problems) : 42 of 319
##Genome-Annotation-Data-END##