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Sequence Set Browser

 

NZ_AAWD00000000.1 Vibrio cholerae NCTC 8457

Master
# of Scaffolds/Chrs: 203
BioProject: PRJNA224116
BioSample: SAMN02435855
Assembly: GCF_000153945.1
Keywords: WGS
Annotation: Scaffolds
Organism: Vibrio cholerae NCTC 8457show lineagehide lineage
Biosource:
/mol_type = genomic genomic
/strain = NCTC 8457
WGS: AAWD01000001:AAWD01000388
Scaffolds: NZ_AAWD01000094:NZ_AAWD01000094, NZ_AAWD01000126:NZ_AAWD01000126, NZ_AAWD01000131:NZ_AAWD01000131, NZ_AAWD01000221:NZ_AAWD01000221, NZ_AAWD01000230:NZ_AAWD01000230, NZ_AAWD01000254:NZ_AAWD01000254, NZ_AAWD01000262:NZ_AAWD01000262, NZ_AAWD01000265:NZ_AAWD01000267, NZ_AAWD01000271:NZ_AAWD01000271, NZ_AAWD01000274:NZ_AAWD01000274, NZ_AAWD01000278:NZ_AAWD01000279, NZ_AAWD01000281:NZ_AAWD01000282, NZ_AAWD01000286:NZ_AAWD01000288, NZ_AAWD01000290:NZ_AAWD01000291, NZ_AAWD01000295:NZ_AAWD01000295, NZ_AAWD01000299:NZ_AAWD01000299, NZ_AAWD01000302:NZ_AAWD01000303, NZ_AAWD01000305:NZ_AAWD01000305, NZ_AAWD01000307:NZ_AAWD01000308, NZ_AAWD01000310:NZ_AAWD01000310, NZ_AAWD01000312:NZ_AAWD01000313, NZ_AAWD01000315:NZ_AAWD01000322, NZ_AAWD01000324:NZ_AAWD01000328, NZ_AAWD01000330:NZ_AAWD01000390
203 scaffolds, 3,469 proteins, total length is 4,082,088 bases
Reference:
Annotation of Vibrio cholerae NCTC 8457 : Unpublished – Heidelberg,J., Sebastian,Y.
Submission:
Submitted (26-DEC-2006) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – Heidelberg,J.

The Vibrio cholerae NCTC 8457 whole genome shotgun (WGS) project has the project accession NZ_AAWD00000000. This version of the project (01) has the accession number NZ_AAWD01000000, and consists of sequences NZ_DS177946-NZ_DS178043.

Annotation was added to the contigs in March 2007.

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 03/22/2017 11:35:59
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 4.1
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 4,149
CDS (total) : 4,055
Genes (coding) : 3,593
CDS (coding) : 3,593
Genes (RNA) : 94
rRNAs : 5, 8, 9 ( 5S, 16S, 23S )
complete rRNAs : 5, 1 ( 5S, 23S )
partial rRNAs : 8, 8 ( 16S, 23S )
tRNAs : 68
ncRNAs : 4
Pseudo Genes (total) : 462
Pseudo Genes (ambiguous residues) : 16 of 462
Pseudo Genes (frameshifted) : 205 of 462
Pseudo Genes (incomplete) : 283 of 462
Pseudo Genes (internal stop) : 45 of 462
Pseudo Genes (multiple problems) : 80 of 462
##Genome-Annotation-Data-END##