skip to main content

Sequence Set Browser

 

NZ_AAJW00000000.2 Escherichia coli E110019

Master
# of Scaffolds/Chrs: 137
BioProject: PRJNA224116
BioSample: SAMN02435896
Assembly: GCF_000167875.1
Keywords: WGS
Annotation: Scaffolds
Organism: Escherichia coli E110019show lineagehide lineage
Biosource:
/mol_type = genomic genomic
/serovar = O111:H9
/strain = E110019
WGS: AAJW02000001:AAJW02000137
Scaffolds: NZ_AAJW02000001:NZ_AAJW02000137
137 scaffolds, 5,191 proteins, total length is 5,376,211 bases
Submission:
Submitted (01-SEP-2005) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – show 8 authorshide authors
Rasko,D.A., Rosovitz,M.J., Kaper,J.B., Myers,G.S.A., Seshadri,R., Cer,R.Z., Jiang,L., Ravel,J.
Submission:
Submitted (16-JUN-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – show 9 authorshide authors
Rasko,D., Rosovitz,M., Myers,G., Seshadri,R., Cer,R., Jiang,L., Ravel,J., Fricke,W.F., Sebastian,Y.

On Jun 27, 2008 this sequence version replaced gi:75240295.

The Escherichia coli E110019 whole genome shotgun (WGS) project has the project accession NZ_AAJW00000000. This version of the project (02) has the accession number NZ_AAJW02000000, and consists of sequences AAJW02000001-AAJW02000137.

Escherichia coli E110019 was isolated from an outbreak in Finland (Viljanen MK et al, Lancet (1990), 336(8719): 831-4). The outbreak affected approximately 650 students at a school. In a fashion uncommon in other EPEC strains, E. coli E110019 spread from person-to-person to over 100 close contacts outside of the school setting. E. coli E110019 represents an atypical enteropathogenic E. coli (atypical EPEC) characterized by the lack of previously identified EPEC virulence factors including the EAF plasmid. E110019 is serotype O111:H9.

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 05/15/2017 19:48:27
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 4.2
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 5,824
CDS (total) : 5,725
Genes (coding) : 5,287
CDS (coding) : 5,287
Genes (RNA) : 99
rRNAs : 8, 6, 8 ( 5S, 16S, 23S )
complete rRNAs : 8, 4, 4 ( 5S, 16S, 23S )
partial rRNAs : 2, 4 ( 16S, 23S )
tRNAs : 70
ncRNAs : 7
Pseudo Genes (total) : 438
Pseudo Genes (ambiguous residues) : 0 of 438
Pseudo Genes (frameshifted) : 200 of 438
Pseudo Genes (incomplete) : 204 of 438
Pseudo Genes (internal stop) : 94 of 438
Pseudo Genes (multiple problems) : 58 of 438
CRISPR Arrays : 1
##Genome-Annotation-Data-END##