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Sequence Set Browser

 

NCQP00000000.1 Pyrodictium delaneyi

Master
# of Contigs: 9
# of Proteins: 2,019
Total length: 2,042,801 bp
BioProject: PRJNA382239
BioSample: SAMN06702682
Keywords: WGS
Annotation: Contigs
Organism: Pyrodictium delaneyishow lineagehide lineage
Biosource:
/collection_date = 15-May-2004
/country = Pacific Ocean: Juan de Fuca Ridge
/isolation_source = hydrothermal vent
/lat_lon = 47.9501 N 129.097 W
/mol_type = genomic
/strain = Hulk
WGS: NCQP01000001:NCQP01000009
Reference:
The draft genome of the hyperthermophilic archaeon 'Pyrodictium delaneyi strain Hulk', an iron and nitrate reducer, reveals the capacity for sulfate reduction : Unpublished – Demey,L.M., Miller,C., Manzella,M., Reguera,G., Kashefi,K.
Submission:
Submitted (09-MAY-2017) Microbiology and Molecular Genetics, Michigan State University, 567 Wilson Rd., East Lansing, MI 48824, USA – Demey,L.M., Miller,C., Manzella,M., Reguera,G., Kashefi,K.

The Pyrodictium delaneyi whole genome shotgun (WGS) project has the project accession NCQP00000000. This version of the project (01) has the accession number NCQP01000000, and consists of sequences NCQP01000001-NCQP01000009.

Bacteria and source DNA available from Kazem Kashefi, 567 Wilson Rd., East Lansing, MI 48824.

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 05/10/2017 11:58:39
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 4.1
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) : 2,089
CDS (total) : 2,036
Genes (coding) : 2,019
CDS (coding) : 2,019
Genes (RNA) : 53
rRNAs : 2, 1, 1 (5S, 16S, 23S)
complete rRNAs : 2, 1, 1 (5S, 16S, 23S)
partial rRNAs :
tRNAs : 47
ncRNAs : 2
Pseudo Genes (total) : 17
Pseudo Genes (ambiguous residues) : 0 of 17
Pseudo Genes (frameshifted) : 8 of 17
Pseudo Genes (incomplete) : 10 of 17
Pseudo Genes (internal stop) : 1 of 17
Pseudo Genes (multiple problems) : 2 of 17
CRISPR Arrays : 7
##Genome-Annotation-Data-END##
##Genome-Assembly-Data-START##
Assembly Method : Velvet v. 2-6-2015
Assembly Name : Pdsh-A1.0
Genome Representation : Full
Expected Final Version : Yes
Genome Coverage : 300.0x
Sequencing Technology : Illumina MiSeq
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:NCQP01.1.gbff.gz 1.3 Mb
FASTA:NCQP01.1.fsa_nt.gz 618.6 kb
ASN.1:NCQP01.1.bbs.gz 1.1 Mb