Sign in to NCBI
skip to main content

Sequence Set Browser

 

GADI00000000.1 Ixodes ricinus

Master
# of Contigs: 8,685
# of Proteins: 8,685
Total length: 5,465,358 bp
BioProject: PRJNA177622
BioSample: SAMN01765647, SAMN01765648, SAMN01765658, SAMN01765659
Sequence Read Archive: SRR592662, SRR592663, SRR592664, SRR592665, SRR592674, SRR592675, SRR592676, SRR592677
Keywords: TSA
Annotation: Contigs
Organism: Ixodes ricinusshow lineagehide lineage
Biosource:
/dev_stage = adult female; nymphs
/mol_type = mRNA
/sex = both
/tissue_type = salivary gland
TSA: GADI01000001:GADI01008685
Reference:
De novo Ixodes ricinus salivary transcriptome analysis using two different next generation sequencing methodologies : Unpublished – show 6 authorshide authors
Schwarz,A., von Reumont,B.M., Erhart,J., Chagas,A.C., Ribeiro,J.M.C., Kotsyfakis,M.
Submission:
Submitted (17-DEC-2012) Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, 12735 Twinbrook Parkway room 2E32D, Rockville, MD 20852, USA – show 6 authorshide authors
Schwarz,A., von Reumont,B.M., Erhart,J., Chagas,A.C., Ribeiro,J.M.C., Kotsyfakis,M.

Abyss was run with every other k value from 24 to 64. Trinity was run with default parameters. Concatenated assemblies were clustered by 12 iterations of blasts with decreasing word size (300 to 60) that fed the cap3 assembler.

##Assembly-Data-START##
Assembly Method : abyss v. 1.3.4; trinity v. 2012-06; cap3 v. 1999
Sequencing Technology : 454; Illumina
##Assembly-Data-END##
Contigs
Proteins
Download

Contigs:

GenBank:GADI01.1.gbff.gz 4.3 Mb
FASTA:GADI01.1.fsa_nt.gz 1.7 Mb
ASN.1:GADI01.1.bbs.gz 3.5 Mb

Proteins:

GenPept:GADI01P.1.gnp.gz 1.7 Mb
FASTA:GADI01P.1.fsa_aa.gz 1.1 Mb
ASN.1:GADI01P.1.bbs.gz 1.4 Mb
History
Minor Version Create Date
1 01/17/2013
7 11/12/2017
8 11/13/2017