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GADI00000000.1 Ixodes ricinus
# of Contigs: 8,685 # of Proteins: 8,685 Total length: 5,465,358 bp BioProject: PRJNA177622 BioSample: SAMN01765647, SAMN01765648, SAMN01765658, SAMN01765659 Sequence Read Archive: SRR592662, SRR592663, SRR592664, SRR592665, SRR592674, SRR592675, SRR592676, SRR592677 Keywords: TSA Annotation: Contigs Organism: Ixodes ricinus – show lineagehide lineage Biosource:/dev_stage = adult female; nymphs/mol_type = mRNA/sex = both/tissue_type = salivary gland TSA: GADI01000001:GADI01008685 Reference:De novo Ixodes ricinus salivary transcriptome analysis using two different next generation sequencing methodologies : Unpublished – show 6 authorshide authorsSchwarz,A., von Reumont,B.M., Erhart,J., Chagas,A.C., Ribeiro,J.M.C., Kotsyfakis,M. Submission:Submitted (17-DEC-2012) Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, 12735 Twinbrook Parkway room 2E32D, Rockville, MD 20852, USA – show 6 authorshide authorsSchwarz,A., von Reumont,B.M., Erhart,J., Chagas,A.C., Ribeiro,J.M.C., Kotsyfakis,M.
Abyss was run with every other k value from 24 to 64. Trinity was run with default parameters. Concatenated assemblies were clustered by 12 iterations of blasts with decreasing word size (300 to 60) that fed the cap3 assembler.
##Assembly-Data-START## Assembly Method : abyss v. 1.3.4; trinity v. 2012-06; cap3 v. 1999 Sequencing Technology : 454; Illumina ##Assembly-Data-END##
Minor Version Create Date 1 01/17/2013 7 11/12/2017 8 11/13/2017