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GACK00000000.1 Rhipicephalus pulchellus
# of Contigs: 11,227 # of Proteins: 11,227 Total length: 16,933,801 bp BioProject: PRJNA170743 Sequence Read Archive: SRR521835, SRR521944, SRR521951, SRR521953 Keywords: TSA Annotation: Contigs Organism: Rhipicephalus pulchellus – show lineagehide lineage Biosource:/dev_stage = adult/mol_type = mRNA/tissue_type = salivary gland TSA: GACK01000001:GACK01011227 Reference:Sexual differences in the sialomes of the zebra tick, Rhipicephalus pulchellus : J Proteomics 117, 120-144 (2015) – Tan,A.W., Francischetti,I.M., Slovak,M., Kini,R.M., Ribeiro,J.M. Submission:Submitted (16-NOV-2012) Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, 12735 Twinbrook Parkway room 2E32D, Rockville, MD 20852, USA – Tan,A.A.W.L., Francischetti,I.M.B., Manjunatha,K.K.R., Ribeiro,J.M.C.
Abyss was run with every even k value parameter from 24 to 96 and minimum coverage of 10. Trinity was run with minimum coverage of 10. Combined assemblies were clustered by a parallelized pipeline of blasts feeding cap3 assemblers with a decreasing word size (-W) from 300 to 56.
##Assembly-Data-START## Assembly Method : abyss v. 1.3.4; trinity v. 2012-06-08; cap3 v. 1999 Sequencing Technology : Illumina ##Assembly-Data-END##