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Sequence Set Browser

 

GACK00000000.1 Rhipicephalus pulchellus

Master
# of Contigs: 11,227
# of Proteins: 11,227
Total length: 16,933,801 bp
BioProject: PRJNA170743
Sequence Read Archive: SRR521835, SRR521944, SRR521951, SRR521953
Keywords: TSA
Annotation: Contigs
Organism: Rhipicephalus pulchellusshow lineagehide lineage
Biosource:
/dev_stage = adult
/mol_type = mRNA
/tissue_type = salivary gland
TSA: GACK01000001:GACK01011227
Reference:
Sexual differences in the sialomes of the zebra tick, Rhipicephalus pulchellus : J Proteomics 117, 120-144 (2015) – Tan,A.W., Francischetti,I.M., Slovak,M., Kini,R.M., Ribeiro,J.M.
Submission:
Submitted (16-NOV-2012) Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, 12735 Twinbrook Parkway room 2E32D, Rockville, MD 20852, USA – Tan,A.A.W.L., Francischetti,I.M.B., Manjunatha,K.K.R., Ribeiro,J.M.C.

Abyss was run with every even k value parameter from 24 to 96 and minimum coverage of 10. Trinity was run with minimum coverage of 10. Combined assemblies were clustered by a parallelized pipeline of blasts feeding cap3 assemblers with a decreasing word size (-W) from 300 to 56.

##Assembly-Data-START##
Assembly Method : abyss v. 1.3.4; trinity v. 2012-06-08; cap3 v. 1999
Sequencing Technology : Illumina
##Assembly-Data-END##
Contigs
Proteins
Download

Contigs:

GenBank:GACK01.1.gbff.gz 11.7 Mb
FASTA:GACK01.1.fsa_nt.gz 4.9 Mb
ASN.1:GACK01.1.bbs.gz 8.9 Mb

Proteins:

GenPept:GACK01P.1.gnp.gz 4.5 Mb
FASTA:GACK01P.1.fsa_aa.gz 3.2 Mb
ASN.1:GACK01P.1.bbs.gz 3.6 Mb
History
Minor Version Create Date
1 12/04/2012
8 11/12/2017