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Sequence Set Browser

 

GABI00000000.1 Puccinellia tenuiflora

Master
# of Contigs: 1,196
# of Proteins: 0
Total length: 701,264 bp
BioProject: PRJNA176609
Keywords: TSA
Organism: Puccinellia tenuiflorashow lineagehide lineage
Biosource:
/dev_stage = 45 days after germination
/mol_type = mRNA
/tissue_type = seedling
TSA: GABI01000001:GABI01001196
Reference:
Physiological and molecular features of Puccinellia tenuiflora tolerating salt and alkaline-salt stress : J Integr Plant Biol (2012) In press – Zhang,X., Wei,Q.L., Wang,Z.Z., Wang,T.
Submission:
Submitted (19-OCT-2012) Laboratory for Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, Beijing 100093, China – Zhang,X., Wei,Q.Li., Wang,Z.Zi., Wang,T.

The cDNA library of this project has the library accession number LIBEST_028028 in dbEST database, and GenBank access numbers of EST sequences is from JZ098916 to JZ107276.The CAP3 (Contig Assembly Program 3) clips 5' and 3' low quality end regions in ESTs. The overlap detection is performed by finding chains of ungapped segment identical alignment. ESTs are then joined to form contigs in decreasing order of overlap scores, and forward-reverse constraints are used to make corrections to contigs. Finally a multiple sequence alignment of the ESTs is constructed.

##Assembly-Data-START##
Assembly Method : CAP3 v. 2008-11-20
Sequencing Technology : Sanger dideoxy sequencing; MegaBACE 1000
##Assembly-Data-END##
Contigs
Download
GenBank:GABI01.1.gbff.gz 366.8 kb
FASTA:GABI01.1.fsa_nt.gz 224.9 kb
ASN.1:GABI01.1.bbs.gz 212.2 kb
History
Minor Version Create Date
1 10/31/2012
5 11/12/2017
6 12/11/2017