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Sequence Set Browser


CAMC00000000.1 Clostridioides difficile T20

# of Contigs: 210
# of Proteins: 3,486
# of Scaffolds/Chrs: 210
Total length: 3,815,975 bp
BioProject: PRJEB189
BioSample: SAMEA3138817
Keywords: WGS
Annotation: Contigs
Organism: Clostridioides difficile T20show lineagehide lineage
/mol_type = genomic
/strain = T20
WGS: CAMC01000001:CAMC01000210
Scaffolds: HF922387:HF922596
210 scaffolds, total length is 3,815,975 bases
Sequence similarity of Clostridium difficile strains by analysis of conserved genes and genome content is reflected by their ribotype affiliation : PLoS ONE 9 (1), E86535 (2014) – show 9 authorshide authors
Kurka,H., Ehrenreich,A., Ludwig,W., Monot,M., Rupnik,M., Barbut,F., Indra,A., Dupuy,B., Liebl,W.
Submitted (15-AUG-2012) Institut Pasteur, Genome et Genetique, 28 rue du Docteur Roux, Paris, F-75015, FRANCE – Monot,M.

The Clostridioides difficile T20 whole genome shotgun (WGS) project has the project accession CAMC00000000. This version of the project (01) has the accession number CAMC01000000, and consists of sequences CAMC01000001-CAMC01000210.

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM, PsortB and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MicroScope annotation platform

GenBank:CAMC01.1.gbff.gz 2.8 Mb
FASTA:CAMC01.1.fsa_nt.gz 1.1 Mb
ASN.1:CAMC01.1.bbs.gz 2.1 Mb