CAEA00000000.1 Gadus morhua
This genomic sequence record was removed because it has been superseded by a new assembly of the genome.
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# of Contigs: 554,869 (554869 are dead) # of Proteins: 0 # of Scaffolds/Chrs: 6,467 (6467 are dead) Total length: 608,029,870 bp BioProject: PRJNA41391 BioSample: SAMEA3138401 Keywords: WGS Organism: Gadus morhua – show lineagehide lineage Biosource: /mol_type = genomicWGS: CAEA01000001:CAEA01554869 Scaffolds: HE566046:HE572512 6,467 scaffolds, total length is 611,230,789 basesReference: The genome sequence of Atlantic cod reveals a unique immune system : Nature 477 (7363), 207-210 (2011) – show 42 authorshide authorsStar,B., Nederbragt,A.J., Jentoft,S., Grimholt,U., Malmstrom,M., Gregers,T.F., Rounge,T.B., Paulsen,J., Solbakken,M.H., Sharma,A., Wetten,O.F., Lanzen,A., Winer,R., Knight,J., Vogel,J.H., Aken,B., Andersen,O., Lagesen,K., Tooming-Klunderud,A., Edvardsen,R.B., Tina,K.G., Espelund,M., Nepal,C., Previti,C., Karlsen,B.O., Moum,T., Skage,M., Berg,P.R., Gjoen,T., Kuhl,H., Thorsen,J., Malde,K., Reinhardt,R., Du,L., Johansen,S.D., Searle,S., Lien,S., Nilsen,F., Jonassen,I., Omholt,S.W., Stenseth,N.C., Jakobsen,K.S.Submission: Submitted (20-MAY-2010) to the INSDC. Star B., Department of Biology, University of Oslo, P.O. Box 1066 Blindern, NO-0316 Oslo, Norway – Star,B.The Gadus morhua whole genome shotgun (WGS) project has the project accession CAEA00000000. This version of the project (01) has the accession number CAEA01000000, and consists of sequences CAEA01000001-CAEA01554869.
The Atlantic Cod genome was sequenced from a wild-caught individual from the The North East Arctic cod (NEAC) population, designated NEAC_001. Due to the large population size we expected NEAC_001 to exhibit substantial levels of heterozygosity. Genomic DNA used for sequencing was obtained from blood (using high molecular weight DNA agarose blood plugs). Sequencing was done exclusively using the 454 GS FLX Titanium platform and protocols, with both shotgun and paired-end libraries (insert sizes ranging from 1 to 20 kb). We calculated genome size, based on average sequencing depth (k-mer distributions), to be 830 Mbp. The raw reads were assembled using newbler from 454 Life Sciences, and numerous gaps due to heterozygosity were resolved using custom scripts.
This genomic sequence record was removed because it has been superseded by a new assembly of the genome.
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Minor Version Create Date 1 08/25/2011 3 07/06/2016