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Sequence Set Browser

 

CABZ00000000.1 Danio rerio

Master
# of Contigs: 119,119
# of Proteins: 0
Total length: 1,400,912,823 bp
BioProject: PRJNA11776
BioSample: SAMEA3146315
Keywords: WGS
Organism: Danio rerioshow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = Tuebingen
WGS: CABZ01000001:CABZ01119119
Reference:
Zebrafish Whole Genome Shotgun Assembly WGS31 : Unpublished – Yong,G., Ning,Z.
Submission:
Submitted (13-MAY-2010) Howe K., Wellcome Trust, Sanger Institute, Hinxton, Cambridge CB10 1SA, UK – Howe,K.

The Danio rerio whole genome shotgun (WGS) project has the project accession CABZ00000000. This version of the project (01) has the accession number CABZ01000000, and consists of sequences CABZ01000001-CABZ01119119.

WGS31 is a novel whole genome shotgun assembly based on the datasets of 7.5x capillary shotgun reads and 30x Illumina reads. Contigs were first generated from the Illumina data of a double-haploid Tuebingen individual using Fuzzypath (Ning, Z., unpublished) and then combined with the capillary reads of another double-haploid Tuebingen individual, assembled with Phusion (PMID: 12529309).

Contigs
Download
GenBank:CABZ01.1.gbff.gz 205 Mb
 CABZ01.2.gbff.gz 204.1 Mb
 CABZ01.3.gbff.gz 159.7 Mb
FASTA:CABZ01.1.fsa_nt.gz 143.2 Mb
 CABZ01.2.fsa_nt.gz 142.5 Mb
 CABZ01.3.fsa_nt.gz 109.1 Mb
ASN.1:CABZ01.1.bbs.gz 113 Mb
 CABZ01.2.bbs.gz 112.7 Mb
 CABZ01.3.bbs.gz 87.6 Mb