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Sequence Set Browser


CABR00000000.1 mine drainage metagenome

# of Contigs: 179
# of Proteins: 2,771
# of Scaffolds/Chrs: 37
Total length: 2,530,310 bp
BioProject: PRJNA41549
BioSample: SAMEA3146299
Keywords: WGS
Annotation: Contigs
Organism: mine drainage metagenomeshow lineagehide lineage
/collection_date = 21-May-2007
/country = France:Carnoules
/isolation_source = Carnoules arsenic-contaminated mine drainage
/lat_lon = 44.12 N 4 E
/mol_type = genomic
/note = Carnoules bin 7
WGS: CABR01000001:CABR01000179
Scaffolds: FN597534:FN597570
37 scaffolds, total length is 2,544,510 bases
Diversity of trophic interactions inside an arsenic-rich microbial ecosystem : Unpublished – show 29 authorshide authors
Bertin,P.N., Heinrich-Salmeron,A., Pelletier,E., Goulhen-Chollet,F., Arsene-Ploetze,F., Gallien,S., Calteau,A., Vallenet,D., Casiot,C., Chane-Woon-Ming,B., Giloteaux,L., Barakat,M., Bonnefoy,V., Bruneel,O., Chandler,M., Cleiss,J., Duran,R., Elbaz-Poulichet,F., Fonknechten,N., Lauga,B., Mornico,D., Ortet,P., Schaeffer,C., Siguier,P., Alexander Thil Smith,A., Van Dorsselaer,A., Weissenbach,J., Medigue,C., Le Paslier,D.
Submitted (16-OCT-2009) Pelletier E., CEA / Genoscope, CP 5706, 91057 Evry cedex, N/A, FRANCE – Pelletier,E.

The mine drainage metagenome whole genome shotgun (WGS) project has the project accession CABR00000000. This version of the project (01) has the accession number CABR01000000, and consists of sequences CABR01000001-CABR01000179.

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM, PsortB and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MaGe annotation system

GenBank:CABR01.1.gbff.gz 2 Mb
FASTA:CABR01.1.fsa_nt.gz 771.9 kb
ASN.1:CABR01.1.bbs.gz 1.5 Mb