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Sequence Set Browser

 

CABM00000000.1 mine drainage metagenome

Master
# of Contigs: 72
# of Proteins: 4,177
# of Scaffolds: 9
Total length: 3,999,759 bp
BioProject: PRJNA38045
BioSample: SAMEA3146280
Keywords: WGS
Annotation: Contigs
Organism: mine drainage metagenomeshow lineagehide lineage
Biosource:
/collection_date = 21-May-2007
/country = France:Carnoules
/environmental_sample
/isolation_source = Carnoules arsenic-contaminated mine drainage
/lat_lon = 44.12 N 4 E
/metagenomic
/mol_type = genomic
/note = Carnoules bin 2
WGS: CABM01000001:CABM01000072
Scaffolds: FN597428:FN597436
9 scaffolds, total length is 4,006,059 bases
Reference:
Diversity of trophic interactions inside an arsenic-rich microbial ecosystem : Unpublished – show 29 authorshide authors
Bertin,P.N., Heinrich-Salmeron,A., Pelletier,E., Goulhen-Chollet,F., Arsene-Ploetze,F., Gallien,S., Calteau,A., Vallenet,D., Casiot,C., Chane-Woon-Ming,B., Giloteaux,L., Barakat,M., Bonnefoy,V., Bruneel,O., Chandler,M., Cleiss,J., Duran,R., Elbaz-Poulichet,F., Fonknechten,N., Lauga,B., Mornico,D., Ortet,P., Schaeffer,C., Siguier,P., Alexander Thil Smith,A., Van Dorsselaer,A., Weissenbach,J., Medigue,C., Le Paslier,D.
Submission:
Submitted (16-OCT-2009) Pelletier E., CEA / Genoscope, CP 5706, 91057 Evry cedex, N/A, FRANCE – Pelletier,E.

The mine drainage metagenome whole genome shotgun (WGS) project has the project accession CABM00000000. This version of the project (01) has the accession number CABM01000000, and consists of sequences CABM01000001-CABM01000072.

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM, PsortB and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MaGe annotation system http://www.genoscope.cns.fr/agc/mage.

Contigs
Proteins
Download
GenBank:CABM01.1.gbff.gz 2.8 Mb
FASTA:CABM01.1.fsa_nt.gz 1.2 Mb
ASN.1:CABM01.1.bbs.gz 2.2 Mb