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Sequence Set Browser

 

CAAP00000000.3 Vitis vinifera

Master
# of Contigs: 14,665
# of Proteins: 26,346
# of Scaffolds: 2,098
Total length: 470,268,414 bp
BioProject: PRJEA18785
BioSample: SAMEA2272750
Keywords: WGS
Annotation: Scaffolds
Organism: Vitis viniferashow lineagehide lineage
Biosource:
/cultivar = PN40024
/mol_type = genomic
WGS: CAAP03000001:CAAP03014665
Scaffolds: FN594950:FN597014, FN597015:FN597047
2,098 scaffolds, 26,346 proteins, total length is 971,451,052 bases
Reference:
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla : Nature 449 (7161), 463-467 (2007) – show 57 authorshide authors
Jaillon,O., Aury,J.M., Noel,B., Policriti,A., Clepet,C., Casagrande,A., Choisne,N., Aubourg,S., Vitulo,N., Jubin,C., Vezzi,A., Legeai,F., Hugueney,P., Dasilva,C., Horner,D., Mica,E., Jublot,D., Poulain,J., Bruyere,C., Billault,A., Segurens,B., Gouyvenoux,M., Ugarte,E., Cattonaro,F., Anthouard,V., Vico,V., Del Fabbro,C., Alaux,M., Di Gaspero,G., Dumas,V., Felice,N., Paillard,S., Juman,I., Moroldo,M., Scalabrin,S., Canaguier,A., Le Clainche,I., Malacrida,G., Durand,E., Pesole,G., Laucou,V., Chatelet,P., Merdinoglu,D., Delledonne,M., Pezzotti,M., Lecharny,A., Scarpelli,C., Artiguenave,F., Pe,M.E., Valle,G., Morgante,M., Caboche,M., Adam-Blondon,A.F., Weissenbach,J., Quetier,F., Wincker,P., French-Italian Public Consortium for Grapevine Genome Characterization
Submission:
Submitted (07-FEB-2007) Quetier F., Genoscope - Centre National de Sequencage, CP 5706 EVRY Cedex, F-91057, FRANCE – Quetier,F.
Submission:
Submitted (30-SEP-2009) Scalabrin S., Istituto di Genomica Applicata, Via J.Linussio, 51, Udine 33100 Italy, ITALY – Scalabrin,S.

On Dec 3, 2009 this sequence version replaced gi:157040842.

The Vitis vinifera whole genome shotgun (WGS) project has the project accession CAAP00000000. This version of the project (03) has the accession number CAAP03000000, and consists of sequences CAAP03000001-CAAP03014665.

This is a 'working draft' sequence, generated by whole genome shotgun. This assembly was made at a 12X coverage of the genome, sequenced by Sanger method. Sequencing effort has been performed by GENOSCOPE, CRIBI (Consortium VIGNA) and IGA. More information available at http://www.genoscope.cns.fr/vitis and http://www.vitisgenome.it/ and http://www.appliedgenomics.org/ Email: seqref@genoscope.cns.fr.

Contigs
Download
GenBank:CAAP03.1.gbff.gz 196.4 Mb
FASTA:CAAP03.1.fsa_nt.gz 135.3 Mb
ASN.1:CAAP03.1.bbs.gz 107.5 Mb