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Sequence Set Browser

 

CAAJ00000000.1 Plasmodium chabaudi chabaudi

Master
# of Contigs: 10,690
# of Proteins: 14,747
Total length: 16,893,362 bp
BioProject: PRJNA147
BioSample: SAMEA3138178
Keywords: WGS
Annotation: Contigs
Organism: Plasmodium chabaudi chabaudishow lineagehide lineage
Biosource:
/clone_lib = pUC18
/mol_type = genomic
/sub_species = chabaudi
WGS: CAAJ01000001:CAAJ01010690
Reference:
A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses : Science 307 (5706), 82-86 (2005) – show 30 authorshide authors
Hall,N., Karras,M., Raine,J.D., Carlton,J.M., Kooij,T.W., Berriman,M., Florens,L., Janssen,C.S., Pain,A., Christophides,G.K., James,K., Rutherford,K., Harris,B., Harris,D., Churcher,C., Quail,M.A., Ormond,D., Doggett,J., Trueman,H.E., Mendoza,J., Bidwell,S.L., Rajandream,M.A., Carucci,D.J., Yates,J.R. III, Kafatos,F.C., Janse,C.J., Barrell,B., Turner,C.M., Waters,A.P., Sinden,R.E.
Reference:
A global survey of the molecular life-strategies of malaria parasites by integrated genomic, transcriptomic and proteomic analyses of both vertebrate and mosquito stages : Unpublished – show 30 authorshide authors
Hall,N., Karras,M., Raine,J.D., Carlton,J.M., Kooij,T.W.A., Berriman,M., Florens,L., Janssen,C.S., Pain,A., Christophides,G.K., James,K., Rutherford,K., Harris,B., Harris,D., Churcher,C., Quail,M.A., Ormond,D., Doggett,J., Trueman,H.E., Mendoza,J., Bidwell,S.L., Rajandream,M.A., Carucci,D.J., Yates,J.R., Kafatos,F.C., Janse,C.J., Barrell,B., Turner,C.M.R., Waters,A.P., Sinden,R.S.
Submission:
Submitted (01-SEP-2004) Pathogen Sequencing Unit, The Sanger Institute, The Wellcome Trust Genome Campus, Cambridge CB10 1SA – Hall,N.

The Plasmodium chabaudi chabaudi whole genome shotgun (WGS) project has the project accession CAAJ00000000. This version of the project (01) has the accession number CAAJ01000000, and consists of sequences CAAJ01000001-CAAJ01010690.

THIS IS A LOW COVERAGE GENOME ASSEMBLY CONTAINING AUTOMATED ANNOTATION THERE MAY BE MISTAKES IN THE ANNOTATION AS WELL AS THE UNDERLYING SEQUENCE AND ASSEMBLY. MANY GENE PREDICTIOS ARE PARTIAL AND WILL NOT CONTAIN START OR STOP CODONS. SOME GENE PREDICTIONS HAVE NON-STANDARD SPLICING OR IN FRAME STOP CODONS.THE SEQUENCE HAS BEEN RELEASED AND PUBLISHED IN THIS CONDITION BY THE SANGER INSTITUTE FOR THE BENEFIT OF THE SCIENTIFIC COMMUNITY. THE SANGER INSTITUTE IS COMMITTED TO TRYING TO OBTAIN FUNDS TO COMPLETE THE GENOME AND CURATE THE ANNOTATION.

Contigs
Proteins
Download
GenBank:CAAJ01.1.gbff.gz 10.7 Mb
FASTA:CAAJ01.1.fsa_nt.gz 5 Mb
ASN.1:CAAJ01.1.bbs.gz 7.8 Mb