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Sequence Set Browser


BABO00000000.1 Oryza sativa Japonica Group

# of Contigs: 654,543
# of Proteins: 0
# of Scaffolds/Chrs: 12
Total length: 306,177,972 bp
BioProject: PRJDA39809
Sequence Read Archive: DRR000022, DRR000023, DRR000024, DRR000025, DRR000026, DRR000027, DRR000028, DRR000029, DRR000030
BioSample: SAMD00009497
Keywords: WGS
Organism: Oryza sativa Japonica Groupshow lineagehide lineage
/cultivar = Koshihikari
/mol_type = genomic
WGS: BABO01000001:BABO01654543
Scaffolds: DG000025:DG000036
12 scaffolds, total length is 382,150,945 bases
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms : BMC Genomics 11, 267 (2010) – show 7 authorshide authors
Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T., Yano,M.
Submitted (06-AUG-2009) Contact:Masahiro Yano National Institute of Agrobiological Sciences, QTL Genomics Research Center; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL : – Yano,M., Nagasaki,H., Ebana,K.

The Oryza sativa Japonica Group whole genome shotgun (WGS) project has the project accession BABO00000000. This version of the project (01) has the accession number BABO01000000, and consists of sequences BABO01000001-BABO01654543.

Genome Coverage: 15.7x Sequencing Technology: Illumina Solexa.

GenBank:BABO01.1.gbff.gz 77.8 Mb
 BABO01.2.gbff.gz 70 Mb
 BABO01.3.gbff.gz 15.7 Mb
ASN.1:BABO01.1.bbs.gz 44.5 Mb
 BABO01.2.bbs.gz 39.9 Mb
 BABO01.3.bbs.gz 8.9 Mb