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Sequence Set Browser

 

BAAE00000000.1 Oryzias latipes

Master
# of Contigs: 346,141
# of Proteins: 0
# of Scaffolds/Chrs: 38,235
Total length: 585,154,741 bp
BioProject: PRJNA19569
BioSample: SAMD00036522
Keywords: WGS
Organism: Oryzias latipesshow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = HNI
WGS: BAAE01000001:BAAE01346141
Scaffolds: DF000001:DF038235
38,235 scaffolds, total length is 632,213,252 bases
Reference:
The medaka draft genome and insights into vertebrate genome evolution : Nature 447 (7145), 714-719 (2007) – show 38 authorshide authors
Kasahara,M., Naruse,K., Sasaki,S., Nakatani,Y., Qu,W., Ahsan,B., Yamada,T., Nagayasu,Y., Doi,K., Kasai,Y., Jindo,T., Kobayashi,D., Shimada,A., Toyoda,A., Kuroki,Y., Fujiyama,A., Sasaki,T., Shimizu,A., Asakawa,S., Shimizu,N., Hashimoto,S., Yang,J., Lee,Y., Matsushima,K., Sugano,S., Sakaizumi,M., Narita,T., Ohishi,K., Haga,S., Ohta,F., Nomoto,H., Nogata,K., Morishita,T., Endo,T., Shin-I,T., Takeda,H., Morishita,S., Kohara,Y.
Submission:
Submitted (23-MAR-2006) Contact:Masahiro Kasahara University of Tokyo, Department of Computational Biology; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan – show 7 authorshide authors
Kasahara,M., Sasaki,S., Shin-i,T., Naruse,K., Takeda,H., Morishita,S., Kohara,Y.

The Oryzias latipes whole genome shotgun (WGS) project has the project accession BAAE00000000. This version of the project (01) has the accession number BAAE01000000, and consists of sequences BAAE01000001-BAAE01346141.

Medaka genome sequencing project web site provides more details and informative views of the genome assembly. URL:http://medaka.utgenome.org/

Contigs
Download
GenBank:BAAE01.1.gbff.gz 111.8 Mb
 BAAE01.2.gbff.gz 108.4 Mb
 BAAE01.3.gbff.gz 39.6 Mb
FASTA:BAAE01.1.fsa_nt.gz 76.3 Mb
 BAAE01.2.fsa_nt.gz 73.8 Mb
 BAAE01.3.fsa_nt.gz 25.9 Mb
ASN.1:BAAE01.1.bbs.gz 65.9 Mb
 BAAE01.2.bbs.gz 64.2 Mb
 BAAE01.3.bbs.gz 23.6 Mb