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Sequence Set Browser


AXBK00000000.1 Adhaeribacter aquaticus DSM 16391

# of Contigs: 16
# of Proteins: 0
# of Scaffolds/Chrs: 1
Total length: 5,166,891 bp
BioProject: PRJNA76501
BioSample: SAMN02441120
Keywords: WGS
Organism: Adhaeribacter aquaticus DSM 16391show lineagehide lineage
/culture_collection = DSM:16391
/mol_type = genomic
/strain = DSM 16391
WGS: AXBK01000001:AXBK01000016
Scaffolds: KI421517:KI421517
1 scaffold, total length is 4,833,585 bases
Submitted (23-AUG-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 17 authorshide authors
Eisen,J., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Adhaeribacter aquaticus DSM 16391 whole genome shotgun (WGS) project has the project accession AXBK00000000. This version of the project (01) has the accession number AXBK01000000, and consists of sequences AXBK01000001-AXBK01000016.

URL -- JGI Project ID: 403675 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) ( Contacts: Jonathan Eisen ( Tanja Woyke ( Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. ( Full annotations are available from IMG.

assembly : ALLPATHS v. R37654
country : United Kingdom
environment : Fresh water; Aquatic; Biofilm
investigation_type : bacteria_archaea
isol_growth_condt : 15774669
project_name : Adhaeribacter aquaticus MBRG1.5, DSM 16391
sequencing_meth : WGS
ref_biomaterial : DSM 16391, NCIMB 14008
biotic_relationship : Free living
rel_to_oxygen : Obligate aerobe
finishing_strategy : Level 2: High-Quality Draft
trophic_level : Chemoorganotroph
GOLD Stamp ID : Gi03970
Current Finishing Status : Level 3: Improved-High-Quality Draft
Type Strain : Yes
Funding Program : DOE-CSP 2011
Isolation Site : Freshwater biofilm; United Kingdom
Source of Isolate : freshwater biofilm developed on a stainless steel surface under a fluid velocity of 0.26 m s(-1)
Cell Shape : Rod-shaped
Motility : Nonmotile
Temperature Range : Mesophile
Gram Staining : Gram-
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : ALLPATHS v. R37654
Genome Coverage : Unknown
Sequencing Technology : 454-GS-FLX-Titanium; Illumina
GenBank:AXBK01.1.gbff.gz 2.1 Mb
FASTA:AXBK01.1.fsa_nt.gz 1.5 Mb
ASN.1:AXBK01.1.bbs.gz 1.2 Mb