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Sequence Set Browser

 

AXBG00000000.1 Sedimentitalea nanhaiensis DSM 24252

Master
# of Contigs: 30
# of Proteins: 0
# of Scaffolds/Chrs: 3
Total length: 4,946,250 bp
BioProject: PRJNA78295
BioSample: SAMN02440717
Keywords: WGS
Organism: Sedimentitalea nanhaiensis DSM 24252show lineagehide lineage
Biosource:
/culture_collection = DSM:24252
/mol_type = genomic
/strain = DSM 24252
WGS: AXBG01000001:AXBG01000030
Scaffolds: KI421508:KI421510
3 scaffolds, total length is 4,739,486 bases
Submission:
Submitted (23-AUG-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 17 authorshide authors
Klenk,H.-P., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Sedimentitalea nanhaiensis DSM 24252 whole genome shotgun (WGS) project has the project accession AXBG00000000. This version of the project (01) has the accession number AXBG01000000, and consists of sequences AXBG01000001-AXBG01000030.

URL -- http://www.jgi.doe.gov JGI Project ID: 404180 Source DNA and Organism available from Hans-Peter Klenk (hpk@dsmz.de) Source DNA available from Hans-Peter Klenk (hpk@dsmz.de) Organism available from Hans-Peter Klenk (hpk@dsmz.de) Contacts: Hans-Peter Klenk (hpk@dsmz.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
assembly : ALLPATHS v. R37654
country : China
environment : Aquatic; Marine; Sand; Sea water; Sediment
investigation_type : bacteria_archaea
isol_growth_condt : 19651744
lat_lon : 15.55 114.49
project_name : Leisingera nanhaiensis NH52F, DSM 24252
sequencing_meth : WGS
ref_biomaterial : ACTCC AB 208316, LMG 24841, MCCC 1A04178, DSM 24252
biotic_relationship : Free living
rel_to_oxygen : Anaerobe
GOLD Stamp ID : Gi10857
Current Finishing Status : Level 3: Improved-High-Quality Draft
Type Strain : Yes
Funding Program : DOE-CSP 2010
Gene Calling Method : Prodigal 1.4, GenePRIMP
Isolation Site : Sandy sediment from the South China Sea
Cell Shape : Rod-shaped
Motility : Motile
Temperature Range : Mesophile
Temperature Optimum : 25C
Salinity : Halophile
pH : 7 - 8.5
Gram Staining : Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : ALLPATHS v. R37654
Genome Coverage : Unknown
Sequencing Technology : 454-GS-FLX-Titanium; Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AXBG01.1.gbff.gz 2 Mb
FASTA:AXBG01.1.fsa_nt.gz 1.4 Mb
ASN.1:AXBG01.1.bbs.gz 1.2 Mb