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Sequence Set Browser

 

AWNW00000000.1 Candidatus Hydrogenedens terephthalicus JGI OTU-1

Master
# of Contigs: 106
# of Proteins: 0
Total length: 2,874,403 bp
BioProject: PRJNA213448
BioSample: SAMN02441759
Keywords: WGS
Organism: Candidatus Hydrogenedens terephthalicus JGI OTU-1show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = JGI OTU-1
WGS: AWNW01000001:AWNW01000106
Reference:
Insights into the phylogeny and coding potential of microbial dark matter : Nature 499 (7459), 431-437 (2013) – show 22 authorshide authors
Rinke,C., Schwientek,P., Sczyrba,A., Ivanova,N.N., Anderson,I.J., Cheng,J.F., Darling,A., Malfatti,S., Swan,B.K., Gies,E.A., Dodsworth,J.A., Hedlund,B.P., Tsiamis,G., Sievert,S.M., Liu,W.T., Eisen,J.A., Hallam,S.J., Kyrpides,N.C., Stepanauskas,R., Rubin,E.M., Hugenholtz,P., Woyke,T.
Submission:
Submitted (29-JUL-2013) Joint Genome Insitution, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA – show 17 authorshide authors
Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Lobos,E., Harmon-Smith,M., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T.

The Candidatus Hydrogenedens terephthalicus JGI OTU-1 whole genome shotgun (WGS) project has the project accession AWNW00000000. This version of the project (01) has the accession number AWNW01000000, and consists of sequences AWNW01000001-AWNW01000106.

Combined assembly of 4 Hydrogenedentes single cell genomes (NCBI accession numbers: AQYQ00000000, AQRV00000000, ASNU00000000, ASNV00000000) with an average nucleotide identity above 97%.

##Genome-Assembly-Data-START##
Assembly Method : Velvet v. June 2012; AllPaths v. LG r39750
Assembly Name : Hydrogenedentes bacterium OTU 1
Single-cell Amplification : MDA
Genome Coverage : 30.0x
Sequencing Technology : Illumina HiSeq
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AWNW01.1.gbff.gz 1.2 Mb
FASTA:AWNW01.1.fsa_nt.gz 870.2 kb
ASN.1:AWNW01.1.bbs.gz 761.8 kb