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Sequence Set Browser

 

AVYE00000000.1 Escherichia coli HVH 175 (4-3405184)

Master
# of Contigs: 46
# of Proteins: 5,215
# of Scaffolds/Chrs: 21
Total length: 5,427,177 bp
BioProject: PRJNA186203
BioSample: SAMN01885816
Keywords: WGS
Annotation: Contigs
Organism: Escherichia coli HVH 175 (4-3405184)show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = HVH 175 (4-3405184)
WGS: AVYE01000001:AVYE01000046
Scaffolds: KE700550:KE700570
21 scaffolds, total length is 5,490,794 bases
Reference:
The Genome Sequence of Escherichia coli HVH 175 (4-3405184) : Unpublished – show 33 authorshide authors
Feldgarden,M., Frimodt-Moller,N., Leihof,R.F., Rasmussen,L., Young,S.K., Zeng,Q., Gargeya,S., Abouelleil,A., Alvarado,L., Berlin,A.M., Chapman,S.B., Gainer-Dewar,J., Goldberg,J., Gnerre,S., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M., Poon,T., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform, The Broad Institute Genome Sequencing Center for Infectious Disease
Submission:
Submitted (24-JUL-2013) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 33 authorshide authors
Feldgarden,M., Frimodt-Moller,N., Leihof,R.F., Rasmussen,L., Young,S.K., Zeng,Q., Gargeya,S., Abouelleil,A., Alvarado,L., Berlin,A.M., Chapman,S.B., Gainer-Dewar,J., Goldberg,J., Gnerre,S., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M., Poon,T., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform, The Broad Institute Genome Sequencing Center for Infectious Disease

The Escherichia coli HVH 175 (4-3405184) whole genome shotgun (WGS) project has the project accession AVYE00000000. This version of the project (01) has the accession number AVYE01000000, and consists of sequences AVYE01000001-AVYE01000046.

Please be aware that the annotation is done automatically with little or no manual curation.

##Genome-Assembly-Data-START##
Assembly Method : allpaths v. R46367
Assembly Name : Esch_coli_HVH_175_4-3405184_V1
Genome Coverage : 136.0x
Sequencing Technology : Illumina
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:AVYE01.1.gbff.gz 3.5 Mb
FASTA:AVYE01.1.fsa_nt.gz 1.6 Mb
ASN.1:AVYE01.1.bbs.gz 2.7 Mb