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Sequence Set Browser

 

AUOS00000000.2 Cytophagaceae bacterium JGI 0001001-B3

Master
# of Contigs: 173
# of Proteins: 0
Total length: 2,089,376 bp
BioProject: PRJNA176081
BioSample: SAMN02441135
Keywords: WGS
Organism: Cytophagaceae bacterium JGI 0001001-B3show lineagehide lineage
Biosource:
/mol_type = genomic
/note = single cell isolate
/strain = JGI 0001001-B3
WGS: AUOS02000001:AUOS02000173
Submission:
Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 17 authorshide authors
Tringe,S., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute
Submission:
Submitted (03-SEP-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 17 authorshide authors
Tringe,S., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

On Oct 29, 2013 this sequence version replaced gi:523935322.

The Cytophagaceae bacterium JGI 0001001-B3 whole genome shotgun (WGS) project has the project accession AUOS00000000. This version of the project (02) has the accession number AUOS02000000, and consists of sequences AUOS02000001-AUOS02000173.

URL -- http://www.jgi.doe.gov JGI Project ID: 1007632 Source DNA and Organism available from Susannah Tringe (sgtringe@lbl.gov) Source DNA available from Susannah Tringe (sgtringe@lbl.gov) Organism available from Susannah Tringe (sgtringe@lbl.gov) Contacts: Susannah Tringe (sgtringe@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
assembly : Velvet v. 1.1.04; ALLPATHS v. R37654
investigation_type : bacteria_archaea
project_name : Cytophagaceae bacterium JGI 0001001-B3
sequencing_meth : WGS
GOLD Stamp ID : Gi22254
Gram Staining : Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Velvet v. 1.1.04; ALLPATHS v. R37654
Single-cell Amplification : Yes
Genome Coverage : Unknown
Sequencing Technology : Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AUOS02.1.gbff.gz 927.3 kb
FASTA:AUOS02.1.fsa_nt.gz 639.8 kb
ASN.1:AUOS02.1.bbs.gz 577.2 kb