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Sequence Set Browser


AULR00000000.1 Microbacterium indicum DSM 19969

# of Contigs: 30
# of Proteins: 0
# of Scaffolds: 2
Total length: 2,808,202 bp
BioProject: PRJNA188869
BioSample: SAMN02440686
Keywords: WGS
Organism: Microbacterium indicum DSM 19969show lineagehide lineage
/culture_collection = DSM:19969
/mol_type = genomic
/strain = DSM 19969
WGS: AULR01000001:AULR01000030
Scaffolds: KE383821:KE383822
2 scaffolds, total length is 248,311 bases
Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 16 authorshide authors
Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Microbacterium indicum DSM 19969 whole genome shotgun (WGS) project has the project accession AULR00000000. This version of the project (01) has the accession number AULR01000000, and consists of sequences AULR01000001-AULR01000030.

URL -- JGI Project ID: 1013852 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) ( Contacts: Nikos Kyrpides ( Tanja Woyke ( Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. ( Full annotations are available from IMG.

country : Indian Ocean
depth : 5904 m
environment : Deep sea; Sediment; Aquatic; Marine
investigation_type : bacteria_archaea
isol_growth_condt : 17684264
project_name : Microbacterium indicum DSM 19969
sequencing_meth : WGS
ref_biomaterial : DSM 19969
finishing_strategy : Level 1: Standard Draft
GOLD Stamp ID : Gi11687
Type Strain : Yes
Funding Program : DOE-CSP 2012
Isolation Site : Deep-sea sediment sample
Cell Shape : Rod-shaped
Temperature Range : Mesophile
Temperature Optimum : 22 C
pH : 5-9
Gram Staining : Gram+
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Unknown program v. before 2013-03-26
Genome Coverage : Unknown
Sequencing Technology : Illumina HiSeq 2000
GenBank:AULR01.1.gbff.gz 1.1 Mb
FASTA:AULR01.1.fsa_nt.gz 801.2 kb
ASN.1:AULR01.1.bbs.gz 627.1 kb