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Sequence Set Browser

 

AULP00000000.1 Spongiibacter marinus DSM 19753

Master
# of Contigs: 22
# of Proteins: 0
# of Scaffolds/Chrs: 1
Total length: 3,434,221 bp
BioProject: PRJNA188866
BioSample: SAMN02440685
Keywords: WGS
Organism: Spongiibacter marinus DSM 19753show lineagehide lineage
Biosource:
/culture_collection = DSM:19753
/mol_type = genomic
/strain = DSM 19753
WGS: AULP01000001:AULP01000022
Scaffolds: KE383819:KE383819
1 scaffold, total length is 144,605 bases
Submission:
Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 16 authorshide authors
Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Spongiibacter marinus DSM 19753 whole genome shotgun (WGS) project has the project accession AULP00000000. This version of the project (01) has the accession number AULP01000000, and consists of sequences AULP01000001-AULP01000022.

URL -- http://www.jgi.doe.gov JGI Project ID: 1013957 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Nikos Kyrpides (nckyrpides@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
collection_date : SEP 2001
country : Mediterranean Sea
environment : Sea water; Aquatic; Marine
investigation_type : bacteria_archaea
isol_growth_condt : 18984680
project_name : Melitea salexigens DSM 19753
sequencing_meth : WGS
ref_biomaterial : DSM 19753
rel_to_oxygen : Aerobe
finishing_strategy : Level 1: Standard Draft
GOLD Stamp ID : Gi11672
Type Strain : Yes
Funding Program : DOE-CSP 2012
Isolation Site : Seawater
Cell Shape : Rod-shaped
Motility : Motile
Temperature Range : Mesophile
Temperature Optimum : 30 C
pH : 6-10
Gram Staining : Gram-
Phenotypes : Catalase positive
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Unknown program v. before 2013-03-26
Genome Coverage : Unknown
Sequencing Technology : Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AULP01.1.gbff.gz 1.4 Mb
FASTA:AULP01.1.fsa_nt.gz 1 Mb
ASN.1:AULP01.1.bbs.gz 837.6 kb