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Sequence Set Browser

 

AULE00000000.1 Paenibacillus taiwanensis DSM 18679

Master
# of Contigs: 31
# of Proteins: 0
# of Scaffolds/Chrs: 5
Total length: 5,242,910 bp
BioProject: PRJNA188802
BioSample: SAMN02440680
Keywords: WGS
Organism: Paenibacillus taiwanensis DSM 18679show lineagehide lineage
Biosource:
/culture_collection = DSM:18679
/mol_type = genomic
/strain = DSM 18679
WGS: AULE01000001:AULE01000031
Scaffolds: KE384306:KE384310
5 scaffolds, total length is 3,389,826 bases
Submission:
Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 16 authorshide authors
Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Paenibacillus taiwanensis DSM 18679 whole genome shotgun (WGS) project has the project accession AULE00000000. This version of the project (01) has the accession number AULE01000000, and consists of sequences AULE01000001-AULE01000031.

URL -- http://www.jgi.doe.gov JGI Project ID: 1013819 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Nikos Kyrpides (nckyrpides@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
collection_date : 2000
country : Taiwan
environment : Soil
investigation_type : bacteria_archaea
isol_growth_condt : 17551057
lat_lon : 25.0262 121.5862
project_name : Paenibacillus taiwanensis DSM 18679
sequencing_meth : WGS
ref_biomaterial : DSM 18679
rel_to_oxygen : Facultative
finishing_strategy : Level 1: Standard Draft
GOLD Stamp ID : Gi11739
Type Strain : Yes
Funding Program : DOE-CSP 2012
Isolation Site : Farmland soil
Cell Shape : Rod-shaped
Motility : Motile
Sporulation : Sporulating
Temperature Range : Mesophile
Temperature Optimum : 30 C
pH : 4.5-12.0
Gram Staining : Gram+
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Unknown program v. before 2013-04-19
Genome Coverage : Unknown
Sequencing Technology : Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AULE01.1.gbff.gz 2.2 Mb
FASTA:AULE01.1.fsa_nt.gz 1.6 Mb
ASN.1:AULE01.1.bbs.gz 1.3 Mb