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Sequence Set Browser

 

AUKY00000000.1 Solobacterium moorei DSM 22971

Master
# of Contigs: 170
# of Proteins: 0
# of Scaffolds/Chrs: 1
Total length: 2,335,456 bp
BioProject: PRJNA188328
BioSample: SAMN02441153
Keywords: WGS
Organism: Solobacterium moorei DSM 22971show lineagehide lineage
Biosource:
/culture_collection = DSM:22971
/mol_type = genomic
/strain = DSM 22971
WGS: AUKY01000001:AUKY01000170
Scaffolds: KE384293:KE384293
1 scaffold, total length is 21,940 bases
Submission:
Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 16 authorshide authors
Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Solobacterium moorei DSM 22971 whole genome shotgun (WGS) project has the project accession AUKY00000000. This version of the project (01) has the accession number AUKY01000000, and consists of sequences AUKY01000001-AUKY01000170.

URL -- http://www.jgi.doe.gov JGI Project ID: 1008478 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Nikos Kyrpides (nckyrpides@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
country : Japan
environment : Feces; Host; Gastrointestinal tract
investigation_type : bacteria_archaea
isol_growth_condt : 10832964
project_name : Solobacterium moorei DSM 22971
sequencing_meth : WGS
ref_biomaterial : DSM 22971
rel_to_oxygen : Anaerobe
finishing_strategy : Level 1: Standard Draft
GOLD Stamp ID : Gi11912
Type Strain : Yes
Funding Program : DOE-CSP 2012
Isolation Site : Human feces
Host Name : Homo sapiens
Gram Staining : Gram+
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Unknown program v. before 2013-05-01
Genome Coverage : Unknown
Sequencing Technology : Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AUKY01.1.gbff.gz 1 Mb
FASTA:AUKY01.1.fsa_nt.gz 707.3 kb
ASN.1:AUKY01.1.bbs.gz 562 kb