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Sequence Set Browser

 

ATFM00000000.1 Propionibacterium sp. HGH0353

Master
# of Contigs: 7
# of Proteins: 2,500
# of Scaffolds/Chrs: 2
Total length: 2,726,475 bp
BioProject: PRJNA169460
BioSample: SAMN02596990
Keywords: WGS
Annotation: Contigs
Organism: Propionibacterium sp. HGH0353show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = HGH0353
WGS: ATFM01000001:ATFM01000007
Scaffolds: KE340299:KE340300
2 scaffolds, total length is 2,741,290 bases
Reference:
The Genome Sequence of Propionibacterium sp. HGH0353 : Unpublished – show 42 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Schmidt,T.M., Dai,D., Dover,J., Walker,B., Young,S., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Allen,A.W., Alvarado,L., Arachchi,H.M., Berlin,A.M., Chapman,S.B., Gainer-Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Ireland,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M., Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genomics Platform
Submission:
Submitted (29-MAY-2013) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 42 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Schmidt,T.M., Dai,D., Dover,J., Walker,B., Young,S., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Allen,A.W., Alvarado,L., Arachchi,H.M., Berlin,A.M., Chapman,S.B., Gainer-Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Ireland,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M., Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genomics Platform

The Propionibacterium sp. HGH0353 whole genome shotgun (WGS) project has the project accession ATFM00000000. This version of the project (01) has the accession number ATFM01000000, and consists of sequences ATFM01000001-ATFM01000007.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Thomas M. Schmidt, Dongjuan Dai, and John Dover. (University of Michigan Medical School, USA). Bacteria provided by Thomas M. Schmidt, Dongjuan Dai, and John Dover. (University of Michigan Medical School, USA). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal.

##Genome-Assembly-Data-START##
Finishing Goal : High-Quality Draft
Current Finishing Status : High-Quality Draft
Assembly Method : allpaths v. R43375
Assembly Name : Prop_sp_HGH0353_V1
Genome Coverage : 168.0x
Sequencing Technology : Illumina
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:ATFM01.1.gbff.gz 1.7 Mb
FASTA:ATFM01.1.fsa_nt.gz 811.6 kb
ASN.1:ATFM01.1.bbs.gz 1.3 Mb