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Sequence Set Browser


ATED00000000.1 Mycobacterium tuberculosis PanR0404

# of Contigs: 134
# of Proteins: 0
# of Scaffolds/Chrs: 1
Total length: 4,338,019 bp
BioProject: PRJNA208598
BioSample: SAMN02471093
Keywords: WGS
Organism: Mycobacterium tuberculosis PanR0404show lineagehide lineage
/collection_date = 2004
/country = Panama
/host = Homo sapiens
/isolation_source = clinical isolate
/mol_type = genomic
/note = multi-drug resistant
/strain = PanR0404
WGS: ATED01000001:ATED01000134
Scaffolds: CM002064:CM002064
1 scaffold, total length is 4,404,247 bases
Multidrug-resistant tuberculosis in Panama is driven by clonal expansion of an MDR-TB strain related to the KZN XDR-TB strain from South Africa : J. Clin. Microbiol. (2013) In press – Lanzas,F., Karakousis,P.C., Sacchettini,J.C., Ioerger,T.R.
Submitted (23-JUN-2013) Department of Computer Science and Engineering, Texas A&M University, 301 H.R. Bright Building, TAMUS 3112, College Station, TX 77843-3112, USA – Ioerger,T.R., Lanzas,F., Karakousis,P.C., Sacchettini,J.C.

The Mycobacterium tuberculosis PanR0404 whole genome shotgun (WGS) project has the project accession ATED00000000. This version of the project (01) has the accession number ATED01000000, and consists of sequences ATED01000001-ATED01000134.

Reference-guided assembly based on Mycobacterium tuberculosis H37Rv. The first and last contigs are contiguous. A single contig was split into two, in order to make dnaA the first gene in the chromosome. Bacteria and source DNA available from Fedora Lanzas, Instituto Conmemorativo Gorgas de Estudios de la Salud, ICGES, Panama.

Assembly Method : in-house software v. 10/18/2012
Assembly Name : fedora0404_IS
Reference-guided Assembly : NC000962.2
Genome Coverage : 71.0x
Sequencing Technology : Illumina GAIIx
GenBank:ATED01.1.gbff.gz 1.8 Mb
FASTA:ATED01.1.fsa_nt.gz 1.3 Mb
ASN.1:ATED01.1.bbs.gz 1021.2 kb