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Sequence Set Browser

 

ARMB00000000.1 Rhodonellum psychrophilum GCM71 = DSM 17998

Master
# of Contigs: 60
# of Proteins: 0
# of Scaffolds/Chrs: 51
Total length: 5,185,522 bp
BioProject: PRJNA183058
BioSample: SAMN02441658
Keywords: WGS; GSC:MIGS:2.1
Organism: Rhodonellum psychrophilum GCM71 = DSM 17998show lineagehide lineage
Biosource:
/culture_collection = DSM:17998
/mol_type = genomic
/strain = DSM 17998
WGS: ARMB01000001:ARMB01000060
Scaffolds: KB906673:KB906723
51 scaffolds, total length is 5,193,701 bases
Submission:
Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 15 authorshide authors
Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T.

The Rhodonellum psychrophilum GCM71 = DSM 17998 whole genome shotgun (WGS) project has the project accession ARMB00000000. This version of the project (01) has the accession number ARMB01000000, and consists of sequences ARMB01000001-ARMB01000060.

URL -- http://www.jgi.doe.gov JGI Project ID: 406540 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Nikos Kyrpides (nckyrpides@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-PGF and JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
investigation_type : bacteria_archaea
project_name : Rhodonellum psychrophilum DSM 17998
collection_date : 2002
lat_lon : 61.18350 -48.01654
depth : Missing
alt_elev : Missing
country : Missing
num_replicons : Missing
ref_biomaterial : DSM 17998
biotic_relationship : Missing
rel_to_oxygen : Aerobe
isol_growth_condt : 17158993
assembly : Velvet v. 1.1.04; ALLPATHS v. r42328
finishing_strategy : Missing
environment : Missing
trophic_level : Chemoheterotroph
sequencing_meth : WGS
GOLD Stamp ID : Gi11854
Type Strain : Yes
Funding Program : DOE-CSP 2012
Isolation Site : Ikaite tufa columns
Cell Shape : Rod-shaped
Motility : Nonmotile
Temperature Range : Psychrophile
Temperature Optimum : 5-10 C
pH : 7.5-10.7
Gram Staining : Gram-
Phenotypes : Alkaliphile
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Velvet v. 1.1.04; ALLPATHS v. r42328
Genome Coverage : Unknown
Sequencing Technology : Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:ARMB01.1.gbff.gz 2.2 Mb
FASTA:ARMB01.1.fsa_nt.gz 1.5 Mb
ASN.1:ARMB01.1.bbs.gz 1.2 Mb