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Sequence Set Browser

 

ARLQ00000000.1 Thioalkalivibrio sp. ALE16

Master
# of Contigs: 42
# of Proteins: 0
# of Scaffolds/Chrs: 39
Total length: 3,141,211 bp
BioProject: PRJNA182466
BioSample: SAMN02441669
Keywords: WGS; GSC:MIGS:2.1
Organism: Thioalkalivibrio sp. ALE16show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = ALE16
WGS: ARLQ01000001:ARLQ01000042
Scaffolds: KB906354:KB906392
39 scaffolds, total length is 3,141,511 bases
Submission:
Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 17 authorshide authors
Muyzer,G., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Thioalkalivibrio sp. ALE16 whole genome shotgun (WGS) project has the project accession ARLQ00000000. This version of the project (01) has the accession number ARLQ01000000, and consists of sequences ARLQ01000001-ARLQ01000042.

URL -- http://www.jgi.doe.gov JGI Project ID: 408281 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
investigation_type : bacteria_archaea
project_name : Thioalkalivibrio sp. ALE16
collection_date : Missing
lat_lon : Missing
depth : Missing
alt_elev : Missing
country : Missing
num_replicons : Missing
ref_biomaterial : Missing
biotic_relationship : Missing
rel_to_oxygen : Missing
isol_growth_condt : Missing
assembly : Velvet v. 1.1.04; ALLPATHS v. r41043
finishing_strategy : Missing
environment : Missing
trophic_level : Missing
sequencing_meth : WGS
GOLD Stamp ID : Gi15232
Funding Program : DOE-CSP 2012
Gram Staining : Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Velvet v. 1.1.04; ALLPATHS v. r41043
Genome Coverage : Unknown
Sequencing Technology : Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:ARLQ01.1.gbff.gz 1.3 Mb
FASTA:ARLQ01.1.fsa_nt.gz 931.7 kb
ASN.1:ARLQ01.1.bbs.gz 736.9 kb