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Sequence Set Browser

 

AQVH00000000.1 crenarchaeote SCGC AAA261-G18

Master
# of Contigs: 137
# of Proteins: 0
Total length: 523,162 bp
BioProject: PRJNA165473
BioSample: SAMN02256485
Keywords: WGS; GSC:MIGS:2.1
Organism: crenarchaeote SCGC AAA261-G18show lineagehide lineage
Biosource:
/mol_type = genomic
/note = single cell isolate
/strain = SCGC AAA261-G18
WGS: AQVH01000001:AQVH01000137
Submission:
Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 16 authorshide authors
Inskeep,W., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T.

The crenarchaeote SCGC AAA261-G18 whole genome shotgun (WGS) project has the project accession AQVH00000000. This version of the project (01) has the accession number AQVH01000000, and consists of sequences AQVH01000001-AQVH01000137.

URL -- http://www.jgi.doe.gov JGI Project ID: 405178 Source DNA and Organism available from William Inskeep (binskeep@montana.edu) Source DNA available from William Inskeep (binskeep@montana.edu) Organism available from William Inskeep (binskeep@montana.edu) Contacts: William Inskeep (binskeep@montana.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
investigation_type : bacteria_archaea
project_name : Crenarchaeota archaeon SCGC AAA261-G18
collection_date : Missing
lat_lon : Missing
depth : Missing
alt_elev : Missing
country : Missing
num_replicons : Missing
ref_biomaterial : Missing
biotic_relationship : Missing
rel_to_oxygen : Missing
isol_growth_condt : Missing
assembly : Velvet v. 1.1.04; ALLPATHS v. r41043
finishing_strategy : Missing
environment : Missing
trophic_level : Missing
sequencing_meth : WGS
GOLD Stamp ID : Gi14101
Funding Program : DOE-GEBA 2011
Gram Staining : Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Velvet v. 1.1.04; ALLPATHS v. r41043
Single-cell Amplification : Yes
Genome Coverage : Unknown
Sequencing Technology : Unknown
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AQVH01.1.gbff.gz 227.1 kb
FASTA:AQVH01.1.fsa_nt.gz 159.4 kb
ASN.1:AQVH01.1.bbs.gz 135 kb