Sign in to NCBI
skip to main content

Sequence Set Browser

 

AQUZ00000000.1 Kribbella catacumbae DSM 19601

Master
# of Contigs: 152
# of Proteins: 0
Total length: 9,627,810 bp
BioProject: PRJNA165397
BioSample: SAMN02256503
Keywords: WGS; GSC:MIGS:2.1
Organism: Kribbella catacumbae DSM 19601show lineagehide lineage
Biosource:
/culture_collection = DSM:19601
/mol_type = genomic
/strain = DSM 19601
WGS: AQUZ01000001:AQUZ01000152
Submission:
Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 15 authorshide authors
Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T.

The Kribbella catacumbae DSM 19601 whole genome shotgun (WGS) project has the project accession AQUZ00000000. This version of the project (01) has the accession number AQUZ01000000, and consists of sequences AQUZ01000001-AQUZ01000152.

URL -- http://www.jgi.doe.gov JGI Project ID: 406059 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Nikos Kyrpides (nckyrpides@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-PGF and JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
investigation_type : bacteria_archaea
project_name : Kribbella catacumbae DSM 19601
collection_date : Missing
lat_lon : 41.858 12.510
depth : Missing
alt_elev : Missing
country : Italy
num_replicons : Missing
ref_biomaterial : DSM 19601
biotic_relationship : Missing
rel_to_oxygen : Aerobe
isol_growth_condt : 18768610
assembly : Velvet v. 1.1.04; ALLPATHS v. r41043
finishing_strategy : Missing
environment : Missing
trophic_level : Missing
sequencing_meth : WGS
GOLD Stamp ID : Gi11584
Current Finishing Status : Level 2: High-Quality Draft
Type Strain : Yes
Funding Program : DOE-CSP 2012
Isolation Site : Tufaceous surfaces with whitish-grey patinas in the catacombs of St Callistus in Rome, Italy
Temperature Range : Mesophile
pH : 5-10
Gram Staining : Gram+
Phenotypes : Catalase positive
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Velvet v. 1.1.04; ALLPATHS v. r41043
Genome Coverage : Unknown
Sequencing Technology : Illumina
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AQUZ01.1.gbff.gz 4 Mb
FASTA:AQUZ01.1.fsa_nt.gz 2.8 Mb
ASN.1:AQUZ01.1.bbs.gz 2.2 Mb