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Sequence Set Browser

 

AQRV00000000.1 Hydrogenedentes bacterium JGI 0000059-N10

Master
# of Contigs: 72
# of Proteins: 0
Total length: 1,200,286 bp
BioProject: PRJNA192411
BioSample: SAMN02441401
Keywords: WGS; GSC:MIGS:2.1
Organism: Hydrogenedentes bacterium JGI 0000059-N10show lineagehide lineage
Biosource:
/mol_type = genomic
/note = single cell isolate
/strain = JGI 0000059-N10
WGS: AQRV01000001:AQRV01000072
Reference:
Insights into the phylogeny and coding potential of microbial dark matter : Nature 499 (7459), 431-437 (2013) – show 22 authorshide authors
Rinke,C., Schwientek,P., Sczyrba,A., Ivanova,N.N., Anderson,I.J., Cheng,J.F., Darling,A., Malfatti,S., Swan,B.K., Gies,E.A., Dodsworth,J.A., Hedlund,B.P., Tsiamis,G., Sievert,S.M., Liu,W.T., Eisen,J.A., Hallam,S.J., Kyrpides,N.C., Stepanauskas,R., Rubin,E.M., Hugenholtz,P., Woyke,T.
Submission:
Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 19 authorshide authors
Huntemann,M., Han,J., Han,C., Chen,A., Kyrpides,N.C., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.N., Schaumberg,A., Pati,A., Liolios,K., Lobos,E.A., Harmon-Smith,M., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Hydrogenedentes bacterium JGI 0000059-N10 whole genome shotgun (WGS) project has the project accession AQRV00000000. This version of the project (01) has the accession number AQRV01000000, and consists of sequences AQRV01000001-AQRV01000072.

URL -- http://www.jgi.doe.gov JGI Project ID: 408108 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Tanja Woyke (twoyke@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-PGF and JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
investigation_type : bacteria_archaea
project_name : candidate division NKB19 bacterium JGI 0000059-N10
collection_date : Missing
lat_lon : Missing
depth : Missing
alt_elev : Missing
country : USA
num_replicons : Missing
ref_biomaterial : Missing
biotic_relationship : Missing
rel_to_oxygen : Missing
isol_growth_condt : Missing
assembly : Velvet v. 1.1.04; ALLPATHS v. R37654
finishing_strategy : Missing
environment : Wastewater
trophic_level : Missing
sequencing_meth : WGS
Type Strain : No
Funding Program : DOE-DD 2011
Gene Calling Method : Prodigal
Isolation Site : TA reactor_biofilm
Source of Isolate : wastewater
Isolation Comments : Single Cell
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Standard Draft
Current Finishing Status : Standard Draft
Assembly Method : Velvet v. 1.1.04; ALLPATHS v. R37654
Single-cell Amplification : MDA
Genome Coverage : Unknown
Sequencing Technology : Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AQRV01.1.gbff.gz 552.5 kb
FASTA:AQRV01.1.fsa_nt.gz 363.8 kb
ASN.1:AQRV01.1.bbs.gz 329.5 kb