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Sequence Set Browser

 

AQPA00000000.1 Pseudomonas thermotolerans DSM 14292

Master
# of Contigs: 77
# of Proteins: 0
# of Scaffolds/Chrs: 75
Total length: 3,748,729 bp
BioProject: PRJNA187118
BioSample: SAMN02441073
Keywords: WGS; GSC:MIGS:2.1
Organism: Pseudomonas thermotolerans DSM 14292show lineagehide lineage
Biosource:
/culture_collection = DSM:14292
/mol_type = genomic
/strain = DSM 14292
WGS: AQPA01000001:AQPA01000077
Scaffolds: KB822599:KB822673
75 scaffolds, total length is 3,752,096 bases
Submission:
Submitted (12-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 15 authorshide authors
Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T.

The Pseudomonas thermotolerans DSM 14292 whole genome shotgun (WGS) project has the project accession AQPA00000000. This version of the project (01) has the accession number AQPA01000000, and consists of sequences AQPA01000001-AQPA01000077.

URL -- http://www.jgi.doe.gov JGI Project ID: 405961 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Nikos Kyrpides (nckyrpides@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-PGF and JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
investigation_type : bacteria_archaea
project_name : Pseudomonas thermotolerans DSM 14292
collection_date : Missing
lat_lon : Missing
depth : Missing
alt_elev : Missing
country : Portugal
num_replicons : Missing
ref_biomaterial : DSM 14292
biotic_relationship : Missing
rel_to_oxygen : Aerobe
isol_growth_condt : 12508889
assembly : Velvet v. 1.1.04; ALLPATHS v. r41043
finishing_strategy : Missing
environment : Fresh water; Host; Aquatic
trophic_level : Missing
sequencing_meth : WGS
GOLD Stamp ID : Gi11831
Type Strain : Yes
Funding Program : DOE-CSP 2012
Isolation Site : Industrial cooking water of a cork-processing plant
Cell Shape : Rod-shaped
Motility : Motile
Sporulation : Nonsporulating
Temperature Range : Thermotolerant
Temperature Optimum : 47 C
pH : 6-10
Gram Staining : Gram-
Phenotypes : Catalase positive
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Velvet v. 1.1.04; ALLPATHS v. r41043
Genome Coverage : Unknown
Sequencing Technology : Illumina; Illumina HiSeq 2000
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AQPA01.1.gbff.gz 1.6 Mb
FASTA:AQPA01.1.fsa_nt.gz 1.1 Mb
ASN.1:AQPA01.1.bbs.gz 876.5 kb