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Sequence Set Browser

 

AQOX00000000.1 Loktanella hongkongensis DSM 17492

Master
# of Contigs: 17
# of Proteins: 0
# of Scaffolds/Chrs: 16
Total length: 3,185,812 bp
BioProject: PRJNA165403
BioSample: SAMN02256514
Keywords: WGS; GSC:MIGS:2.1
Organism: Loktanella hongkongensis DSM 17492show lineagehide lineage
Biosource:
/culture_collection = DSM:17492
/mol_type = genomic
/strain = UST950701-009P
WGS: AQOX01000001:AQOX01000017
Scaffolds: KB822995:KB823010
16 scaffolds, total length is 3,185,912 bases
Reference:
Improved High-Quality Draft of Loktanella hongkongensis DSM 17492 : Unpublished – show 25 authorshide authors
Kyrpides,N., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P., DOE Joint Genome Institute
Submission:
Submitted (03-APR-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 25 authorshide authors
Kyrpides,N., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P., DOE Joint Genome Institute

The Loktanella hongkongensis DSM 17492 whole genome shotgun (WGS) project has the project accession AQOX00000000. This version of the project (01) has the accession number AQOX01000000, and consists of sequences AQOX01000001-AQOX01000017.

URL -- http://www.jgi.doe.gov JGI Project ID: 405829 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Nikos Kyrpides (nckyrpides@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-PGF and JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
investigation_type : bacteria_archaea
project_name : Loktanella hongkongensis DSM 17492
collection_date : Missing
lat_lon : Missing
depth : Missing
alt_elev : Missing
country : China
num_replicons : Missing
ref_biomaterial : DSM 17492
biotic_relationship : Missing
rel_to_oxygen : Aerobe
isol_growth_condt : 15545471
assembly : Velvet v. 1.1.04; ALLPATHS v. R37654
finishing_strategy : Missing
environment : Biofilm
trophic_level : Missing
sequencing_meth : WGS
GOLD Stamp ID : Gi11626
Current Finishing Status : Level 2: High-Quality Draft
Type Strain : Yes
Funding Program : DOE-CSP 2012
Gene Calling Method : Prodigal
Isolation Site : 7-day-old marine biofilm in Hong Kong waters
Cell Shape : Rod-shaped
Motility : Nonmotile
Sporulation : Nonsporulating
Temperature Range : Mesophile
Gram Staining : Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : Velvet v. 1.1.04; ALLPATHS v. R37654
Genome Coverage : unknown
Sequencing Technology : Illumina
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AQOX01.1.gbff.gz 1.3 Mb
FASTA:AQOX01.1.fsa_nt.gz 928 kb
ASN.1:AQOX01.1.bbs.gz 733.9 kb