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Sequence Set Browser

 

AQOG00000000.1 Nelumbo nucifera

Master
# of Contigs: 58,443
# of Proteins: 0
# of Scaffolds/Chrs: 2,357
Total length: 708,050,375 bp
BioProject: PRJNA168000
BioSample: SAMN02054413
Keywords: WGS
Organism: Nelumbo nuciferashow lineagehide lineage
Biosource:
/authority = Nelumbo nucifera Gaertn.
/collection_date = Jun-2010
/country = China: Wuhan
/isolation_source = leaf
/mol_type = genomic
WGS: AQOG01000001:AQOG01058443
Scaffolds: KB846784:KB849140
2,357 scaffolds, total length is 801,843,237 bases
Reference:
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) : Genome Biol. 14 (5), R41 (2013) – show 71 authorshide authors
Ming,R., Vanburen,R., Liu,Y., Yang,M., Han,Y., Li,L.T., Zhang,Q., Kim,M.J., Schatz,M.C., Campbell,M., Li,J., Bowers,J.E., Tang,H., Lyons,E., Ferguson,A.A., Narzisi,G., Nelson,D.R., Blaby-Haas,C.E., Gschwend,A.R., Jiao,Y., Der,J.P., Zeng,F., Han,J., Min,X.J., Hudson,K.A., Singh,R., Grennan,A.K., Karpowicz,S.J., Watling,J.R., Ito,K., Robinson,S.A., Hudson,M.E., Yu,Q., Mockler,T.C., Carroll,A., Zheng,Y., Sunkar,R., Jia,R., Chen,N., Arro,J., Wai,C.M., Wafula,E., Spence,A., Han,Y., Xu,L., Zhang,J., Peery,R., Haus,M.J., Xiong,W., Walsh,J.A., Wu,J., Wang,M.L., Zhu,Y.J., Paull,R.E., Britt,A.B., Du,C., Downie,S.R., Schuler,M.A., Michael,T.P., Long,S.P., Ort,D.R., Schopf,J.W., Gang,D.R., Jiang,N., Yandell,M., Depamphilis,C.W., Merchant,S.S., Paterson,A.H., Buchanan,B.B., Li,S., Shen-Miller,J.
Reference:
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) : Unpublished – show 69 authorshide authors
Ming,R., VanBuren,R., Liu,Y., Yang,M., Han,Y., Li,L.-T., Zhang,Q., Kim,M.-J., Schatz,M.C., Campbell,M., Li,J., Bowers,J.E., Tang,H., Lyons,E., Ferguson,A., Narzisi,G., Nelson,D.R., Blaby-Haas,C.E., Gschwend,A.R., Jiao,Y., Der,J.P., Zeng,F., Han,J., Hudson,K.A., Singh,R., Grennan,A.K., Karpowicz,S.J., Watling,J.R., Ito,K., Robinson,S.A., Hudson,M.E., Yu,Q., Mockler,T.C., Carroll,A., Zheng,Y., Sunkar,R., Jia,R., Chen,N., Arro,J., Wai,C.M., Spence,A., Han,Y., Xu,L., Zhang,J., Peery,R., Haus,M.J., Xiong,W., Walsh,J.A., Wu,J., Wang,M.-L., Zhu,Y.J., Paull,R.E., Britt,A.B., Du,C., Downie,S.R., Schuler,M.A., Michael,T.P., Long,S.P., Ort,D.R., Schopf,W.J., Gang,D.R., Jiang,N., Yandell,M., dePamphilis,C.W., Merchant,S., Paterson,A.H., Buchanan,B., Li,S., Shen-Miller,J.
Submission:
Submitted (09-APR-2013) Department of Plant Biology, University of Illinois at Urbana-Champaign, 1201 W. Gregory Drive, Urbana, IL 61801, USA – show 69 authorshide authors
Ming,R., VanBuren,R., Liu,Y., Yang,M., Han,Y., Li,L.-T., Zhang,Q., Kim,M.-J., Schatz,M.C., Campbell,M., Li,J., Bowers,J.E., Tang,H., Lyons,E., Ferguson,A., Narzisi,G., Nelson,D.R., Blaby-Haas,C.E., Gschwend,A.R., Jiao,Y., Der,J.P., Zeng,F., Han,J., Hudson,K.A., Singh,R., Grennan,A.K., Karpowicz,S.J., Watling,J.R., Ito,K., Robinson,S.A., Hudson,M.E., Yu,Q., Mockler,T.C., Carroll,A., Zheng,Y., Sunkar,R., Jia,R., Chen,N., Arro,J., Wai,C.M., Spence,A., Han,Y., Xu,L., Zhang,J., Peery,R., Haus,M.J., Xiong,W., Walsh,J.A., Wu,J., Wang,M.-L., Zhu,Y.J., Paull,R.E., Britt,A.B., Du,C., Downie,S.R., Schuler,M.A., Michael,T.P., Long,S.P., Ort,D.R., Schopf,W.J., Gang,D.R., Jiang,N., Yandell,M., dePamphilis,C.W., Merchant,S., Paterson,A.H., Buchanan,B., Li,S., Shen-Miller,J.
Submission:
Submitted (05-MAY-2013) Plant Biology, University of Illinois, 505 S. Goodwin Ave., Urbana, IL 61801, USA – Peery,R.M., VanBuren,R., Han,J.O., Downie,S.R., Ming,R.

The Nelumbo nucifera whole genome shotgun (WGS) project has the project accession AQOG00000000. This version of the project (01) has the accession number AQOG01000000, and consists of sequences AQOG01000001-AQOG01058443.

##Genome-Assembly-Data-START##
Assembly Method : AllPaths v. 40102
Assembly Name : Chinese Lotus 1.1
Genome Coverage : 100.0x
Sequencing Technology : Illumina HiSeq; 454
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AQOG01.1.gbff.gz 218 Mb
 AQOG01.2.gbff.gz 93.4 Mb
FASTA:AQOG01.1.fsa_nt.gz 145.7 Mb
 AQOG01.2.fsa_nt.gz 61.6 Mb
ASN.1:AQOG01.1.bbs.gz 129.2 Mb
 AQOG01.2.bbs.gz 56.3 Mb