AQOG00000000.1 Nelumbo nucifera
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# of Contigs: 58,455 # of Proteins: 0 # of Scaffolds/Chrs: 2,357 Total length: 708,504,625 bp BioProject: PRJNA168000 BioSample: SAMN02054413 Keywords: WGS Organism: Nelumbo nucifera – show lineagehide lineage Biosource: /authority = Nelumbo nucifera Gaertn./collection_date = 2010-06-15/country = China: Wuhan/cultivar = China Antique/lat_lon = 30.5833 N 114.2833 E/mol_type = genomic/tissue_type = leavesWGS: AQOG01000001:AQOG01058455 Scaffolds: KB846784:KB849140 2,357 scaffolds, total length is 801,843,237 basesReference: Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) : Genome Biol 14 (5), R41 (2013) – show 71 authorshide authorsMing,R., VanBuren,R., Liu,Y., Yang,M., Han,Y., Li,L.T., Zhang,Q., Kim,M.J., Schatz,M.C., Campbell,M., Li,J., Bowers,J.E., Tang,H., Lyons,E., Ferguson,A.A., Narzisi,G., Nelson,D.R., Blaby-Haas,C.E., Gschwend,A.R., Jiao,Y., Der,J.P., Zeng,F., Han,J., Min,X.J., Hudson,K.A., Singh,R., Grennan,A.K., Karpowicz,S.J., Watling,J.R., Ito,K., Robinson,S.A., Hudson,M.E., Yu,Q., Mockler,T.C., Carroll,A., Zheng,Y., Sunkar,R., Jia,R., Chen,N., Arro,J., Wai,C.M., Wafula,E., Spence,A., Han,Y., Xu,L., Zhang,J., Peery,R., Haus,M.J., Xiong,W., Walsh,J.A., Wu,J., Wang,M.L., Zhu,Y.J., Paull,R.E., Britt,A.B., Du,C., Downie,S.R., Schuler,M.A., Michael,T.P., Long,S.P., Ort,D.R., Schopf,J.W., Gang,D.R., Jiang,N., Yandell,M., dePamphilis,C.W., Merchant,S.S., Paterson,A.H., Buchanan,B.B., Li,S., Shen-Miller,J.Reference: Understanding angiosperm genome interactions and evolution: insights from sacred lotus (Nelumbo nucifera) and the carrot family (Apiaceae) : Thesis University of Illinois at Urbana-Champaign – Peery,R.Submission: Submitted (09-APR-2013) Department of Plant Biology, University of Illinois at Urbana-Champaign, 1201 W. Gregory Drive, Urbana, IL 61801, USA – show 69 authorshide authorsMing,R., VanBuren,R., Liu,Y., Yang,M., Han,Y., Li,L.-T., Zhang,Q., Kim,M.-J., Schatz,M.C., Campbell,M., Li,J., Bowers,J.E., Tang,H., Lyons,E., Ferguson,A., Narzisi,G., Nelson,D.R., Blaby-Haas,C.E., Gschwend,A.R., Jiao,Y., Der,J.P., Zeng,F., Han,J., Hudson,K.A., Singh,R., Grennan,A.K., Karpowicz,S.J., Watling,J.R., Ito,K., Robinson,S.A., Hudson,M.E., Yu,Q., Mockler,T.C., Carroll,A., Zheng,Y., Sunkar,R., Jia,R., Chen,N., Arro,J., Wai,C.M., Spence,A., Han,Y., Xu,L., Zhang,J., Peery,R., Haus,M.J., Xiong,W., Walsh,J.A., Wu,J., Wang,M.-L., Zhu,Y.J., Paull,R.E., Britt,A.B., Du,C., Downie,S.R., Schuler,M.A., Michael,T.P., Long,S.P., Ort,D.R., Schopf,W.J., Gang,D.R., Jiang,N., Yandell,M., dePamphilis,C.W., Merchant,S., Paterson,A.H., Buchanan,B., Li,S., Shen-Miller,J.Submission: Submitted (03-FEB-2015) Plant Biology, University of Illinois, 505 S. Goodwin Ave, Urbana, IL 61801, USA – Peery,R., VanBuren,R., Downie,S.R., Ming,R.The Nelumbo nucifera whole genome shotgun (WGS) project has the project accession AQOG00000000. This version of the project (01) has the accession number AQOG01000000, and consists of sequences AQOG01000001-AQOG01058455.
The mitochondrial contigs of the original assembly, AQOG01058428-AQOG01058443, were replaced by the improved mitochondrial sequences AQOG01058444-AQOG01058455 in Sept 2022.
##Genome-Assembly-Data-START## Assembly Method : AllPaths v. 40102 Assembly Name : Chinese Lotus 1.2 Genome Coverage : 100.0x Sequencing Technology : Illumina HiSeq; 454 ##Genome-Assembly-Data-END## - Contigs
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Minor Version Create Date 1 04/15/2013 5 09/27/2022 6 10/28/2022