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Sequence Set Browser

 

APNO00000000.1 Medicago truncatula

Master
# of Contigs: 8,026
# of Proteins: 57,585
# of Scaffolds/Chrs: 2,186
Total length: 389,975,656 bp
BioProject: PRJNA10791
BioSample: SAMN02299339
Keywords: WGS
Annotation: Scaffolds
Organism: Medicago truncatulashow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = A17
WGS: APNO01000001:APNO01008026
Scaffolds: CM001217:CM001224, KL402726:KL404903
2,186 scaffolds, 57,585 proteins, total length is 412,800,391 bases
Reference:
The Medicago genome provides insight into the evolution of rhizobial symbioses : Nature 480 (7378), 520-524 (2011) – show 124 authorshide authors
Young,N.D., Debelle,F., Oldroyd,G.E., Geurts,R., Cannon,S.B., Udvardi,M.K., Benedito,V.A., Mayer,K.F., Gouzy,J., Schoof,H., Van de Peer,Y., Proost,S., Cook,D.R., Meyers,B.C., Spannagl,M., Cheung,F., De Mita,S., Krishnakumar,V., Gundlach,H., Zhou,S., Mudge,J., Bharti,A.K., Murray,J.D., Naoumkina,M.A., Rosen,B., Silverstein,K.A., Tang,H., Rombauts,S., Zhao,P.X., Zhou,P., Barbe,V., Bardou,P., Bechner,M., Bellec,A., Berger,A., Berges,H., Bidwell,S., Bisseling,T., Choisne,N., Couloux,A., Denny,R., Deshpande,S., Dai,X., Doyle,J.J., Dudez,A.M., Farmer,A.D., Fouteau,S., Franken,C., Gibelin,C., Gish,J., Goldstein,S., Gonzalez,A.J., Green,P.J., Hallab,A., Hartog,M., Hua,A., Humphray,S.J., Jeong,D.H., Jing,Y., Jocker,A., Kenton,S.M., Kim,D.J., Klee,K., Lai,H., Lang,C., Lin,S., Macmil,S.L., Magdelenat,G., Matthews,L., McCorrison,J., Monaghan,E.L., Mun,J.H., Najar,F.Z., Nicholson,C., Noirot,C., O'Bleness,M., Paule,C.R., Poulain,J., Prion,F., Qin,B., Qu,C., Retzel,E.F., Riddle,C., Sallet,E., Samain,S., Samson,N., Sanders,I., Saurat,O., Scarpelli,C., Schiex,T., Segurens,B., Severin,A.J., Sherrier,D.J., Shi,R., Sims,S., Singer,S.R., Sinharoy,S., Sterck,L., Viollet,A., Wang,B.B., Wang,K., Wang,M., Wang,X., Warfsmann,J., Weissenbach,J., White,D.D., White,J.D., Wiley,G.B., Wincker,P., Xing,Y., Yang,L., Yao,Z., Ying,F., Zhai,J., Zhou,L., Zuber,A., Denarie,J., Dixon,R.A., May,G.D., Schwartz,D.C., Rogers,J., Quetier,F., Town,C.D., Roe,B.A.
Reference:
An improved genome release (version Mt4.0) for the model legume Medicago truncatula : BMC Genomics 15, 312 (2014) – show 13 authorshide authors
Tang,H., Krishnakumar,V., Bidwell,S., Rosen,B., Chan,A., Zhou,S., Gentzbittel,L., Childs,K.L., Yandell,M., Gundlach,H., Mayer,K.F., Schwartz,D.C., Town,C.D.
Submission:
Submitted (21-FEB-2014) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr., Rockville, MD 20850, USA – show 145 authorshide authors
Roe,B.A., Debelle,F., Oldroyd,G., Geurts,R., Cannon,S.B., Mayer,K.F., Gouzy,J., Van de Peer,Y., Schoof,H., Cook,D.R., Spannagl,M., Cheung,F., Krishnakumar,V., Gundlach,H., Zhou,S., Mudge,J., Bharti,A.K., Silverstein,K.A., Tang,H., Rombauts,S., Zhou,P., Althof,R., Arbogast,T.S., Arfsten,K.M., Ashmore,C., Aycock,M., Barbe,V., Bardou,P., Bechner,M., Bellec,A., Berger,A., Berges,H., Bidwell,S., Bisseling,T., Choisne,N., Couloux,A., Denny,R., Deschamps,S., Deshpande,S., Do,T., Do,A., Dudez,A.-M., Elharam,M., Fadrosch,D., Feldblyum,T., Fouteau,S., Franken,C., Fu,L., Fu,C., Gao,N., Gibelin,C., Gish,J., Hallab,A., Hartog,M., Hine,E., Hine,R., Hua,A., Humphray,S., Jia,H., Jiang,H., Jing,Y., Joecker,A., Kenton,S.M., Kim,D.-J., Kim,M., Klee,K., Kong,X., Koo,H., Lai,H., Lang,C., Li,S., Lin,S., Macmil,S.L., Magdelenat,G., Manning,T., Matthews,L., Monaghan,E.L., Mun,J.-H., Najar,F.Z., Ni,Y., Nicholson,C., Noirot,C., Osisanya,G., Place,M., Poulain,J., Prion,F., Qi,S., Qin,B., Qu,C., Qu,J., Retzel,E.F., Riddle,C., Sallet,E., Samain,S., Samson,N., Saurat,O., Scarpelli,C., Schiex,T., Segurens,B., Seigfried,M., Shaull,S., Shetty,J., Shi,R., Sims,S., Song,L., Sterck,L., Sukharnikov,L., Tallon,L., Tian,R., Vasylenko,I., Viollet,A., Viswanathan,L., Wang,K., Wang,B.-B., Wang,K., Wang,C., Wang,X., Warfsmann,J., Weissenbach,J., White,D.D., White,J.D., Wiley,G.B., Wilhelm,K.A., Wincker,P., Wu,J., Xing,Y., Xu,W., Xu,X., Yang,L., Yao,Z., Ye,Y., Ying,F., Zhang,P., Zhou,L., Zuber,A., Denarie,J., Dixon,R.A., May,G.D., Schwartz,D.C., Rogers,J., Quetier,F., Young,N.D., Town,C.D., Medicago Genome Sequencing Consortium, International Medicago Genome Annotation Group

The Medicago truncatula whole genome shotgun (WGS) project has the project accession APNO00000000. This version of the project (01) has the accession number APNO01000000, and consists of sequences APNO01000001-APNO01008026.

##Genome-Annotation-Data-START##
Annotation Provider : JCVI
Annotation Version : Mt4.0v2
Annotation Pipeline : JCVI Eukaryotic Genome Annotation Pipeline
Annotation Method : EVidenceModeler (EVM), PASA
Features Annotated : Gene; mRNA; CDS; tRNA
URL : http://www.jcvi.org/medicago
##Genome-Annotation-Data-END##
##Genome-Assembly-Data-START##
Assembly Date : 2012
Assembly Method : AllPaths v. R40324
Assembly Name : MedtrA17_4.0
Genome Coverage : 90.0x
Sequencing Technology : Sanger; 454; Illumina
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:APNO01.1.gbff.gz 162.8 Mb
FASTA:APNO01.1.fsa_nt.gz 111.8 Mb
ASN.1:APNO01.1.bbs.gz 90 Mb