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Sequence Set Browser

 

ANLR00000000.1 Escherichia coli 95.1288

Master
# of Contigs: 682 (8 are dead)
# of Proteins: 5,536
# of Scaffolds/Chrs: 581 (3 are dead)
Total length: 5,187,850 bp
BioProject: PRJNA65611
BioSample: SAMN01041342
Keywords: WGS
Annotation: Contigs
Organism: Escherichia coli 95.1288show lineagehide lineage
Biosource:
/collection_date = 1995
/country = USA
/host = Homo sapiens
/mol_type = genomic
/serotype = O157:H7
/strain = 95.1288
WGS: ANLR01000001:ANLR01000682
Scaffolds: KB001180:KB001760
581 scaffolds, total length is 5,188,907 bases
Reference:
Genomic anatomy of Escherichia coli O157:H7 outbreaks : Unpublished – show 16 authorshide authors
Eppinger,M., Daugherty,S., Agrawal,S., Galens,K., Tallon,L., Shefchek,K., Parankush,S., Cebula,T.A., Feng,P., Soderlund,R., Mammel,M.K., DebRoy,C., Dudley,E.G., Tarr,P.I., Fraser-Liggett,C., Ravel,J.
Submission:
Submitted (22-OCT-2012) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore St., Baltimore, MD 21201, USA – show 16 authorshide authors
Eppinger,M., Daugherty,S., Agrawal,S., Galens,K., Tallon,L., Shefchek,K., Parankush,S., Cebula,T.A., Feng,P., Soderlund,R., Mammel,M.K., DebRoy,C., Dudley,E.G., Tarr,P.I., Fraser-Liggett,C., Ravel,J.

The Escherichia coli 95.1288 whole genome shotgun (WGS) project has the project accession ANLR00000000. This version of the project (01) has the accession number ANLR01000000, and consists of sequences ANLR01000001-ANLR01000682.

Bacterial source available from the Biodefense and Emerging Infections Research Resources Repository.

##Genome-Assembly-Data-START##
Assembly Method : Velvet v. 1.2.01
Genome Coverage : 106.17x
Sequencing Technology : Illumina
##Genome-Assembly-Data-END##
Contigs
Proteins
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Contigs:

GenBank:ANLR01.1.gbff.gz 3.7 Mb
FASTA:ANLR01.1.fsa_nt.gz 1.5 Mb
ASN.1:ANLR01.1.bbs.gz 2.8 Mb

Proteins:

GenPept:ANLR01P.1.gnp.gz 1.4 Mb
FASTA:ANLR01P.1.fsa_aa.gz 982.1 kb
ASN.1:ANLR01P.1.bbs.gz 1.2 Mb
History
Minor Version Create Date
1 12/04/2012
5 09/06/2016
10 11/12/2017