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Sequence Set Browser

 

AMUY00000000.1 Escherichia coli EC1850

Master
# of Contigs: 457 (1 is dead)
# of Proteins: 5,719
# of Scaffolds/Chrs: 394 (1 is dead)
Total length: 5,374,719 bp
BioProject: PRJNA65959
BioSample: SAMN00808709
Keywords: WGS
Annotation: Contigs
Organism: Escherichia coli EC1850show lineagehide lineage
Biosource:
/collection_date = 2009
/country = USA
/host = Homo sapiens
/mol_type = genomic
/serotype = O157:H7
/strain = EC1850
WGS: AMUY01000001:AMUY01000457
Scaffolds: JH952886:JH953279
394 scaffolds, total length is 5,372,588 bases
Reference:
Genomic anatomy of Escherichia coli O157:H7 outbreaks : Unpublished – show 16 authorshide authors
Eppinger,M., Daugherty,S., Agrawal,S., Galens,K., Tallon,L., Shefchek,K., Parankush,S., Cebula,T.A., Feng,P., Soderlund,R., Mammel,M.K., DebRoy,C., Dudley,E.G., Tarr,P.I., Fraser-Liggett,C., Ravel,J.
Submission:
Submitted (25-SEP-2012) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore St., Baltimore, MD 21201, USA – show 16 authorshide authors
Eppinger,M., Daugherty,S., Agrawal,S., Galens,K., Tallon,L., Shefchek,K., Parankush,S., Cebula,T.A., Feng,P., Soderlund,R., Mammel,M.K., DebRoy,C., Dudley,E.G., Tarr,P.I., Fraser-Liggett,C., Ravel,J.

The Escherichia coli EC1850 whole genome shotgun (WGS) project has the project accession AMUY00000000. This version of the project (01) has the accession number AMUY01000000, and consists of sequences AMUY01000001-AMUY01000457.

Bacterial source available from the Biodefense and Emerging Infections Research Resources Repository.

##Genome-Assembly-Data-START##
Assembly Method : Velvet v. 1.2.01
Genome Coverage : 185.26x
Sequencing Technology : Illumina
##Genome-Assembly-Data-END##
Contigs
Proteins
Download

Contigs:

GenBank:AMUY01.1.gbff.gz 3.7 Mb
FASTA:AMUY01.1.fsa_nt.gz 1.6 Mb
ASN.1:AMUY01.1.bbs.gz 2.8 Mb

Proteins:

GenPept:AMUY01P.1.gnp.gz 1.5 Mb
FASTA:AMUY01P.1.fsa_aa.gz 1018.7 kb
ASN.1:AMUY01P.1.bbs.gz 1.2 Mb
History
Minor Version Create Date
1 10/04/2012
5 09/06/2016
10 11/12/2017