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Sequence Set Browser

 

AMPJ00000000.1 Klebsiella michiganensis

Master
# of Contigs: 114
# of Proteins: 0
Total length: 5,844,700 bp
BioProject: PRJNA174058
BioSample: SAMN02470033
Keywords: WGS
Annotation: Contigs
Organism: Klebsiella michiganensisshow lineagehide lineage
Biosource:
/collection_date = Jun-2006
/country = China
/culture_collection = ATCC:BAA-1236
/isolation_source = 2-3 butanediol fermentation
/mol_type = genomic
/strain = M5al
WGS: AMPJ01000001:AMPJ01000114
Reference:
Genome Sequence of Klebsiella oxytoca M5al, a Promising Strain for Nitrogen Fixation and Chemical Production : Genome Announc 1 (1), E00074-12 (2013) – show 7 authorshide authors
Bao,G., Zhang,Y., Du,C., Chen,Z., Li,Y., Cao,Z., Ma,Y.
Submission:
Submitted (06-SEP-2012) Department of Industrial Microbiology and Biotechnology, Institute of Microbiology, Chinese Academy of Sciences, NO.1 West Beichen Road, Beijing 100101, China – Bao,G.

The Klebsiella michiganensis whole genome shotgun (WGS) project has the project accession AMPJ00000000. This version of the project (01) has the accession number AMPJ01000000, and consists of sequences AMPJ01000001-AMPJ01000114.

Reference-guided assembly based on Klebsiella oxytoca KCTC 1686 deposited in NC_016612. Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation. Sequence was updated in March 2014.

The organism was changed from 'Klebsiella oxytoca' to 'Klebsiella michiganensis' in July 2016.

##Genome-Assembly-Data-START##
Assembly Method : Velvet v. 0.7.65; AMOS v. 3.1.10
Genome Coverage : 37x
Sequencing Technology : Illumina GA II
##Genome-Assembly-Data-END##
##Taxonomic-Update-Statistics-START##
This Genome (query) : GCA_000308735.2
Current Name : Klebsiella michiganensis
Previous Name : Klebsiella oxytoca
Date Updated : 2016-07-08
Analysis Type : Average Nucleotide Identity (ANI)
Analysis 1 (A1) : Query vs. PROXYTYPE genome for current name
A1 Genome (subject) : GCA_000633235.1
A1 Name : Klebsiella michiganensis
A1 ANI : 93.89066%
A1 Query Coverage : 85%
A1 Subject Coverage : 85%
Analysis 2 (A2) : Query vs. PROXYTYPE genome for previous name
A2 Genome (subject) : GCA_000507385.1
A2 Name : Klebsiella oxytoca
A2 ANI : 91.65974%
A2 Query Coverage : 83%
A2 Subject Coverage : 84%
##Taxonomic-Update-Statistics-END##
Contigs
Download
GenBank:AMPJ01.1.gbff.gz 4 Mb
FASTA:AMPJ01.1.fsa_nt.gz 1.7 Mb
ASN.1:AMPJ01.1.bbs.gz 1.7 Mb