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Sequence Set Browser


AMBG00000000.1 Enterococcus faecium 513

# of Contigs: 257
# of Proteins: 3,014
# of Scaffolds: 212
Total length: 2,866,541 bp
BioProject: PRJNA82009
BioSample: SAMN02299486
Keywords: WGS
Annotation: Contigs
Organism: Enterococcus faecium 513show lineagehide lineage
/mol_type = genomic
/strain = 513
WGS: AMBG01000001:AMBG01000257
Scaffolds: JH812914:JH813125
212 scaffolds, total length is 2,862,021 bases
Submitted (19-APR-2012) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 26 authorshide authors
Weinstock,G., Sodergren,E., Lobos,E.A., Fulton,L., Fulton,R., Courtney,L., Fronick,C., O'Laughlin,M., Godfrey,J., Wilson,R.M., Miner,T., Farmer,C., Delehaunty,K., Cordes,M., Minx,P., Tomlinson,C., Chen,J., Wollam,A., Pepin,K.H., Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Mitreva,M., Mardis,E.R., Wilson,R.K.

The Enterococcus faecium 513 whole genome shotgun (WGS) project has the project accession AMBG00000000. This version of the project (01) has the accession number AMBG01000000, and consists of sequences AMBG01000001-AMBG01000257.

Enterococcus faecium 513 is a member of the Firmicutes division of the domain Bacteria. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Bacteria was provided by Dan Sahm, PhD, Chief Scientific Officer, Global Infectious Diseases Services, and Chris Pillar, PhD, Senior Scientist (Eurofins Global Central Laboratory, 14100 Park Meadow Drive, Chantilly, VA 20151 USA). Source DNA was provided by Cesar A. Arias, MD, MSc, PhD (Associate Professor of Medicine, Division of Infectious Diseases, Director, Laboratory for Antimicrobial Research, University of Texas Medical School at Houston, MSB 2.112, 6431 Fannin, Houston, TX 77030, USA). Funded by NIH R01 from the Division of Microbiology and Infectious Diseases, NIAID Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56), psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH) is funding the sequence characterization of the Enterococcus faecium 513 genome.

Finishing Goal : High-Quality Draft
Current Finishing Status : High-Quality Draft
Assembly Method : Velvet v. 1.1.04
Genome Coverage : 97x
Sequencing Technology : Illumina
GenBank:AMBG01.1.gbff.gz 2.3 Mb
FASTA:AMBG01.1.fsa_nt.gz 871.9 kb
ASN.1:AMBG01.1.bbs.gz 1.7 Mb