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Sequence Set Browser


AHKG00000000.1 Heterocephalus glaber

# of Contigs: 114,652
# of Proteins: 0
# of Scaffolds/Chrs: 1,094
Total length: 2,314,754,717 bp
BioProject: PRJNA72441
BioSample: SAMN00714537
Keywords: WGS
Annotation: Contigs
Organism: Heterocephalus glabershow lineagehide lineage
/isolate = NMR 29
/mol_type = genomic
/sex = female
WGS: AHKG01000001:AHKG01114652
Scaffolds: JH602043:JH603136
1,094 scaffolds, total length is 2,611,293,332 bases
The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations : Bioinformatics 30 (24), 3558-3560 (2014) – show 11 authorshide authors
Keane,M., Craig,T., Alfoldi,J., Berlin,A.M., Johnson,J., Seluanov,A., Gorbunova,V., Di Palma,F., Lindblad-Toh,K., Church,G.M., de Magalhaes,J.P.
Submitted (23-JAN-2012) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 01742, USA – show 11 authorshide authors
Di Palma,F., Alfoldi,J., Johnson,J., Berlin,A., Gnerre,S., Jaffe,D., MacCallum,I., Young,S., Walker,B.J., Lindblad-Toh,K., The Broad Institute Genome Assembly & Analysis Group, Computational R&D Group, and Sequencing Platform

The Heterocephalus glaber whole genome shotgun (WGS) project has the project accession AHKG00000000. This version of the project (01) has the accession number AHKG01000000, and consists of sequences AHKG01000001-AHKG01114652.

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Vera Gorubnova, University of Rochester, NY.

Assembly Method : AllPaths v. R39605
Assembly Name : HetGla_female_1.0
Genome Coverage : 90x
Sequencing Technology : Illumina HiSeq
GenBank:AHKG01.1.gbff.gz 213.7 Mb
 AHKG01.2.gbff.gz 213.1 Mb
 AHKG01.3.gbff.gz 213.7 Mb
 AHKG01.4.gbff.gz 213.5 Mb
 AHKG01.5.gbff.gz 138.6 Mb
FASTA:AHKG01.1.fsa_nt.gz 145.6 Mb
 AHKG01.2.fsa_nt.gz 145.4 Mb
 AHKG01.3.fsa_nt.gz 145.4 Mb
 AHKG01.4.fsa_nt.gz 145.4 Mb
 AHKG01.5.fsa_nt.gz 93.8 Mb
ASN.1:AHKG01.1.bbs.gz 119.8 Mb
 AHKG01.2.bbs.gz 119.4 Mb
 AHKG01.3.bbs.gz 119.6 Mb
 AHKG01.4.bbs.gz 119.7 Mb
 AHKG01.5.bbs.gz 78.3 Mb
Minor Version Create Date
1 02/15/2012
7 11/12/2017