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Sequence Set Browser

 

AHBB00000000.1 Mus musculus

Master
# of Contigs: 240,489
# of Proteins: 0
# of Scaffolds/Chrs: 2,922
Total length: 2,243,718,839 bp
BioProject: PRJNA60381
BioSample: SAMN00190744
Keywords: WGS
Annotation: Contigs
Organism: Mus musculusshow lineagehide lineage
Biosource:
/isolate = 1
/mol_type = genomic
/sex = female
/strain = 129Sv/Jae
WGS: AHBB01000001:AHBB01240489
Scaffolds: KB726999:KB729920
2,922 scaffolds, total length is 2,563,085,187 bases
Reference:
The Draft Genome of Mus musculus : Unpublished – show 11 authorshide authors
Di Palma,F., Alfoldi,J., Johnson,J., Berlin,A., Gnerre,S., Jaffe,D., MacCallum,I., Young,S., Walker,B.J., Lindblad-Toh,K., The Broad Institute Genome Assembly & Analysis Group, Computational R&D Group, and Sequencing Platform
Submission:
Submitted (17-JAN-2012) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 01742, USA – show 11 authorshide authors
Di Palma,F., Alfoldi,J., Johnson,J., Berlin,A., Gnerre,S., Jaffe,D., MacCallum,I., Young,S., Walker,B.J., Lindblad-Toh,K., The Broad Institute Genome Assembly & Analysis Group, Computational R&D Group, and Sequencing Platform

The Mus musculus whole genome shotgun (WGS) project has the project accession AHBB00000000. This version of the project (01) has the accession number AHBB01000000, and consists of sequences AHBB01000001-AHBB01240489.

Sequenced and assembled at the Broad Institute. Samples for sequencing were provided by Dr. David Feldser from Dr. Tyler Jacks lab at the Massachusestts Institute of Technology, Cambridge, MA. This project was completed as part of developing de novo whole genome sequencing and assembly processes using short-read technologies.

##Genome-Assembly-Data-START##
Assembly Method : AllPaths v. R37040
Assembly Name : mm129svJae1.0
Genome Coverage : 67x
Sequencing Technology : Illumina HiSeq
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AHBB01.1.gbff.gz 210.8 Mb
 AHBB01.2.gbff.gz 210.6 Mb
 AHBB01.3.gbff.gz 210.6 Mb
 AHBB01.4.gbff.gz 210.1 Mb
 AHBB01.5.gbff.gz 109.7 Mb
FASTA:AHBB01.1.fsa_nt.gz 144.6 Mb
 AHBB01.2.fsa_nt.gz 144.5 Mb
 AHBB01.3.fsa_nt.gz 144.6 Mb
 AHBB01.4.fsa_nt.gz 144.3 Mb
 AHBB01.5.fsa_nt.gz 75.5 Mb
ASN.1:AHBB01.1.bbs.gz 119 Mb
 AHBB01.2.bbs.gz 118.9 Mb
 AHBB01.3.bbs.gz 119 Mb
 AHBB01.4.bbs.gz 118.7 Mb
 AHBB01.5.bbs.gz 62.4 Mb