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Sequence Set Browser

 

AGTP00000000.1 Ictidomys tridecemlineatus

Master
# of Contigs: 153,488
# of Proteins: 0
# of Scaffolds/Chrs: 6,037
Total length: 2,311,060,300 bp
BioProject: PRJNA61725
BioSample: SAMN00210855
Keywords: WGS
Annotation: Contigs
Organism: Ictidomys tridecemlineatusshow lineagehide lineage
Biosource:
/isolate = #75
/mol_type = genomic
/sex = female
WGS: AGTP01000001:AGTP01153488
Scaffolds: JH393279:JH399315
6,037 scaffolds, total length is 2,466,660,794 bases
Reference:
The Draft Genome of Spermophilus tridecemlineatus : Unpublished – show 11 authorshide authors
Di Palma,F., Alfoldi,J., Johnson,J., Berlin,A., Gnerre,S., Jaffe,D., MacCallum,I., Young,S., Walker,B.J., Lindblad-Toh,K., The Broad Institute Genome Assembly & Analysis Group, Computational R&D Group, and Sequencing Platform
Submission:
Submitted (01-NOV-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 01742, USA – show 11 authorshide authors
Di Palma,F., Alfoldi,J., Johnson,J., Berlin,A., Gnerre,S., Jaffe,D., MacCallum,I., Young,S., Walker,B.J., Lindblad-Toh,K., The Broad Institute Genome Assembly & Analysis Group, Computational R&D Group, and Sequencing Platform

The Ictidomys tridecemlineatus whole genome shotgun (WGS) project has the project accession AGTP00000000. This version of the project (01) has the accession number AGTP01000000, and consists of sequences AGTP01000001-AGTP01153488.

Sequenced and assembled at the Broad Institute. Samples for sequencing were provided by Dr. David C. McMullen of the Uniformed Services University of the Health Sciences, Bethesda, MD. The ID of the individual providing the samples is #75 (Broad ID 502_Squirrel.).

##Genome-Assembly-Data-START##
Assembly Date : JUN-2011
Assembly Method : ALLPATHS v. R37591
Assembly Name : SpeTri2.0
Genome Coverage : 495.1x
Sequencing Technology : Illumina HiSeq
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AGTP01.1.gbff.gz 209.6 Mb
 AGTP01.2.gbff.gz 178 Mb
 AGTP01.3.gbff.gz 173.1 Mb
 AGTP01.4.gbff.gz 173.4 Mb
 AGTP01.5.gbff.gz 164.2 Mb
 AGTP01.6.gbff.gz 111.5 Mb
 AGTP01.7.gbff.gz 17.5 Mb
ASN.1:AGTP01.1.bbs.gz 119 Mb
 AGTP01.2.bbs.gz 101.7 Mb
 AGTP01.3.bbs.gz 99.2 Mb
 AGTP01.4.bbs.gz 99.2 Mb
 AGTP01.5.bbs.gz 94.2 Mb
 AGTP01.6.bbs.gz 64.8 Mb
 AGTP01.7.bbs.gz 10.4 Mb