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Sequence Set Browser

 

ADAI00000000.1 Vibrio cholerae RC27

Master
# of Contigs: 45
# of Proteins: 3,437
Total length: 4,011,779 bp
BioProject: PRJNA40505
BioSample: SAMN02393826
Keywords: WGS
Annotation: Contigs
Organism: Vibrio cholerae RC27show lineagehide lineage
Biosource:
/biotype = Classical
/collection_date = 1991
/country = Indonesia
/host = Homo sapiens
/mol_type = genomic
/serogroup = O1
/strain = RC27
WGS: ADAI01000001:ADAI01000045
Submission:
Submitted (14-OCT-2009) Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60527, USA – show 14 authorshide authors
Munk,A.C., Tapia,R., Green,L., Rogers,Y., Detter,J.C., Bruce,D., Brettin,T.S., Colwell,R.R., Huq,A., Grim,C.J., Hasan,N.A., Bartels,D., Vonstein,V., Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)

The Vibrio cholerae RC27 whole genome shotgun (WGS) project has the project accession ADAI00000000. This version of the project (01) has the accession number ADAI01000000, and consists of sequences ADAI01000001-ADAI01000045.

DNA Source: Rita Colwell (http://www.cbcb.umd.edu) and Christopher Grim Vibrio cholerae is the type species of the genus, Vibrio, and it is the most clinically important member of this genus for humans, causing a severe, life-threatening diarrheal disease, cholera. It is a natural constituent of aquatic environments, and it infects humans via consumption of water containing larger numbers of pathogenic V. cholerae and/or water contaminated with fecal matter from infected individuals. While almost all of the over 200 serogroups of V. cholerae can cause disease, cholera epidemics and pandemics are attributed to serogroups O1 and O139 that harbor cholera toxin genes, encoded on a prophage. Serogroup O1 can be further divided into two biotypes, Classical and El Tor, and two serotypes, Inaba and Ogawa. Vibrio cholerae RC27 is an O1 Classical isolate from Indonesia, 1991. The NIAID funded Bioinformatics Resource Center PathoSystems Resource Integration Center (http://patricbrc.vbi.vt.edu/) is responsible for genome annotation updates of this record. Genome Coverage: 8x Sequencing Technology: Sanger; 454.

Contigs
Proteins
Download
GenBank:ADAI01.1.gbff.gz 2.6 Mb
FASTA:ADAI01.1.fsa_nt.gz 1.2 Mb
ASN.1:ADAI01.1.bbs.gz 2 Mb