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Sequence Set Browser


ACXZ00000000.1 Pseudomonas syringae pv. syringae FF5

# of Contigs: 4,578
# of Proteins: 6,528
# of Scaffolds/Chrs: 79
Total length: 5,656,753 bp
BioProject: PRJNA33695
BioSample: SAMN00002873
Keywords: WGS
Annotation: Contigs
Organism: Pseudomonas syringae pv. syringae FF5show lineagehide lineage
/mol_type = genomic
/pathovar = syringae
/strain = FF5
WGS: ACXZ01000001:ACXZ01004578
Scaffolds: GG700436:GG700514
79 scaffolds, total length is 6,032,286 bases
Submitted (21-AUG-2009) The Sainsbury Laboratory, Colney Lane, Norwich, Norfolk NR4 7UH, UK – Sohn,K.H., Jones,J.D.G., Studholme,D.J.

The Pseudomonas syringae pv. syringae FF5 whole genome shotgun (WGS) project has the project accession ACXZ00000000. This version of the project (01) has the accession number ACXZ01000000, and consists of sequences ACXZ01000001-ACXZ01004578.

Assembly Method: Velvet Genome Coverage: 100x Sequencing Technology: Solexa.

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: Annotation was added to the contigs in July 2014.

Annotation Provider : NCBI
Annotation Date : 07/16/2014 17:39:57
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 2.6 (rev. 440435)
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes : 6,604
CDS : 6,528
Pseudo Genes : 29
rRNAs : 3 ( 5S, 16S, 23S )
tRNAs : 43
ncRNA : 1
Frameshifted Genes : 17
Assembly Method : Velvet v. unknown
Genome Coverage : 100x
Sequencing Technology : Solexa
GenBank:ACXZ01.1.gbff.gz 4.4 Mb
FASTA:ACXZ01.1.fsa_nt.gz 1.7 Mb
ASN.1:ACXZ01.1.bbs.gz 3.6 Mb