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Sequence Set Browser

 

ACXX00000000.2 [Clostridium] papyrosolvens DSM 2782

Master
# of Contigs: 31
# of Proteins: 4,172
Total length: 4,915,287 bp
BioProject: PRJNA33587
BioSample: SAMN00002727
Keywords: WGS; GSC:MIGS:2.1
Annotation: Contigs
Organism: [Clostridium] papyrosolvens DSM 2782show lineagehide lineage
Biosource:
/country = United Kingdom: Aberdeenshire, Scotland
/isolation_source = estuarine sediment from River Don
/mol_type = genomic
/strain = DSM 2782
WGS: ACXX02000001:ACXX02000031
Reference:
The Non-contiguous Finished genome of Clostridium papyrosolvens : Unpublished – show 21 authorshide authors
Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Misra,M., Chertkov,O., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Mouttaki,H., He,Z., Zhou,J., Hemme,C.L., Woyke,T.
Submission:
Submitted (20-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA – show 15 authorshide authors
Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Mouttaki,H., He,Z., Zhou,J., Hemme,C.L., US DOE Joint Genome Institute (JGI-PGF)
Submission:
Submitted (11-JAN-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA – show 21 authorshide authors
Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Misra,M., Chertkov,O., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Mouttaki,H., He,Z., Zhou,J., Hemme,C.L., Woyke,T.

On Mar 14, 2011 this sequence version replaced gi:256748083.

The [Clostridium] papyrosolvens DSM 2782 whole genome shotgun (WGS) project has the project accession ACXX00000000. This version of the project (02) has the accession number ACXX02000000, and consists of sequences ACXX02000001-ACXX02000031.

URL -- http://www.jgi.doe.gov JGI Project ID: 4085558 Source DNA and Organism available from Christopher L. Hemme (hemmecl@ou.edu) Contacts: Christopher L. Hemme (hemmecl@ou.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).

##Genome-Assembly-Data-START##
Finishing Goal : Noncontiguous Finished
Current Finishing Status : Noncontiguous Finished
Assembly Method : Newbler v. 2.3
Genome Coverage : 30x
Sequencing Technology : 454; Illumina
##Genome-Assembly-Data-END##
##MIGS-Data-START##
investigation_type : bacteria_archaea
project_name : Clostridium papyrosolvens DSM 2782
collection_date : Missing
lat_lon : 57.162143 -2.719417
depth : Missing
alt_elev : Missing
country : United Kingdom
environment : Mud
num_replicons : Missing
ref_biomaterial : DSM 2782, ATCC 35413, NCIB 11394
biotic_relationship : Free living
trophic_level : Chemoorganotroph
rel_to_oxygen : Anaerobe
isol_growth_condt : Missing
sequencing_meth : WGS
assembly : Newbler v. 2.3 (pre-release)
finishing_strategy : Finished
GOLD Stamp ID : Gi02584
Type Strain : Yes
Greengenes ID : 15957
Isolation Site : estuarine sediment, River Don, Aberdeenshire, Scotland
Source of Isolate : Christopher L. Hemme (hemmecl@ou.edu)
Cell Shape : Rod-shaped
Motility : Motile
Sporulation : Sporulating
Temperature Range : Mesophile
Temperature Optimum : 25C
Gram Staining : Gram-
##MIGS-Data-END##
Contigs
Proteins
Download
GenBank:ACXX02.1.gbff.gz 3.4 Mb
FASTA:ACXX02.1.fsa_nt.gz 1.4 Mb
ASN.1:ACXX02.1.bbs.gz 2.6 Mb