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Sequence Set Browser

 

ACNP00000000.1 mine drainage metagenome

Master
# of Contigs: 140
# of Proteins: 2,658
# of Scaffolds/Chrs: 42
Total length: 2,796,464 bp
BioProject: PRJNA18537
BioSample: SAMN02954271
Keywords: WGS
Annotation: Scaffolds
Organism: mine drainage metagenomeshow lineagehide lineage
Biosource:
/collection_date = Jun-2005
/country = USA: Ultra Back A (UBA) site of Richmond Mine (elevation 3100ft) at Iron Mountain, CA
/environmental_sample
/isolation_source = pink subaerial biofilm microbial community collected from the base of 2m high pile of pyrite sediment over which pH 1.1, 41C acid mine drainage solution was flowing
/lat_lon = 40.68 N 122.2 W
/metagenomic
/mol_type = genomic
WGS: ACNP01000001:ACNP01000140
Scaffolds: GG693851:GG693892
42 scaffolds, 2,658 proteins, total length is 2,803,660 bases
Reference:
Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing 'Leptospirillum rubarum' (Group II) and 'Leptospirillum ferrodiazotrophum' (Group III) bacteria in acid mine drainage biofilms : Appl. Environ. Microbiol. 75 (13), 4599-4615 (2009) – show 17 authorshide authors
Goltsman,D.S., Denef,V.J., Singer,S.W., VerBerkmoes,N.C., Lefsrud,M., Mueller,R.S., Dick,G.J., Sun,C.L., Wheeler,K.E., Zemla,A., Baker,B.J., Hauser,L., Land,M., Shah,M.B., Thelen,M.P., Hettich,R.L., Banfield,J.F.
Submission:
Submitted (06-MAY-2009) Earth and Planetary Science, University of California, Berkeley, 307 McCone Hall, Berkeley, CA 94720, USA – show 17 authorshide authors
Goltsman,D.S.A., Denef,V.J., Singer,S.W., Verberkmoes,N.C., Lefsrud,M., Mueller,R., Dick,G.J., Sun,C., Wheeler,K., Zemla,A., Baker,B.J., Hauser,L., Land,M., Shah,M.B., Thelen,M.P., Hettich,R.L., Banfield,J.F.

The mine drainage metagenome whole genome shotgun (WGS) project has the project accession ACNP00000000. This version of the project (01) has the accession number ACNP01000000, and consists of sequences ACNP01000001-ACNP01000140.

This first version of ACNP00000000 has a partial genome of one Leptospirillum group III species. This species consists of the second-most dominant population in a biofilm collected from the UBA location of the Richmond Mine acid mine drainage site, Iron Mountain, near Redding CA. The contigs were assembled into a single genomic path, thus strain variation is not evident in this assembly. Genome Coverage: approximately 15x Sequencing Technology: Sanger.

Contigs
Download
GenBank:ACNP01.1.gbff.gz 1.2 Mb
FASTA:ACNP01.1.fsa_nt.gz 840.3 kb
ASN.1:ACNP01.1.bbs.gz 670.1 kb