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Sequence Set Browser


ACKM00000000.1 Heterorhabditis bacteriophora

# of Contigs: 1,962
# of Proteins: 0
# of Scaffolds/Chrs: 1,240
Total length: 74,356,772 bp
BioProject: PRJNA13977
BioSample: SAMN02953756
Keywords: WGS
Annotation: Contigs
Organism: Heterorhabditis bacteriophorashow lineagehide lineage
/dev_stage = larvae
/mol_type = genomic
/strain = M31e
WGS: ACKM01000001:ACKM01001962
Scaffolds: GL995259:GL996498
1,240 scaffolds, total length is 76,974,349 bases
A Lover and a Fighter: The Genome Sequence of an Entomopathogenic Nematode Heterorhabditis bacteriophora : PLoS ONE 8 (7), E69618 (2013) – show 10 authorshide authors
Bai,X., Adams,B.J., Ciche,T.A., Clifton,S., Gaugler,R., Kim,K.S., Spieth,J., Sternberg,P.W., Wilson,R.K., Grewal,P.S.
Submitted (12-AUG-2011) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA – show 9 authorshide authors
Bai,X., Adams,B.J., Ciche,T.A., Clifton,S.W., Gaugler,R., Grewal,P.S., Spieth,J., Sternberg,P.W., Wilson,R.K.

The Heterorhabditis bacteriophora whole genome shotgun (WGS) project has the project accession ACKM00000000. This version of the project (01) has the accession number ACKM01000000, and consists of sequences ACKM01000001-ACKM01001962.

Heterorhabditis bacteriophora strain TT01 was isolated from Trinidad and Tobago soil (H. Mauleon) and thawed from a cryopreserved stock (A. Burnell). It is host for Photorhabdus luminescens subsp. laumondii strain TT01 symbionts (Fischer-Le Saux). The sequenced strain, M31e, was self-fertilized 16 times (Ciche and Sternberg). Genomic DNA was isolated from infective juvenile dauer-like larvae and first and second larval stages hatched from laid eggs (Kim and Ciche). Nematodes were propagated on lawns of P. temperata RET16 bacteria defective in nematode colonization. Genome size is estimated to be 106.3 +/- 0.3 Mbp. (J. S. Johnston). This submission represents sequenced and assembled 454 data from fragment libraries, from 3kb insert paired end libraries, from bac ends and from 3730 plasmids (done at The Genome Center at Washington University).

Assembly Method : Celera assembler v. 6.0
Assembly Name : Heterorhabditis_bacteriophora-7.0
Genome Coverage : 26.1x
Sequencing Technology : 454; ABI 3730
GenBank:ACKM01.1.gbff.gz 31.3 Mb
FASTA:ACKM01.1.fsa_nt.gz 21.9 Mb
ASN.1:ACKM01.1.bbs.gz 18.5 Mb